AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr12g00396 ATGGAAGGTGGTGACGTGTCTTCACCGACCATAACATCTCCGCCGATAAAAGCAATAAACAAGAACGCTATTCACAGAATCTGCTCCGGTCAAGTGATATTAGACCTACCGTCTGCCGTCAAGGAGCTGGTGGAGAACAGCTTGGACGCCGGTGCCACAAGCATCGAGGTTTTGTTGAAAGAGTACGGTGAAGAATCGTTTCAGGTCGTTGATAACGGTTGCGGCATTTCACCTAACAATTTTAAGGCTCTAGCTCTTAAGCATCATACATCGAAATTAACGGATTTTCCTGATCTTCAATCGTTGACGACTTTTGGATTTAGAGGGGAGGCTCTTAGTGCTTTGTGTAACTTAGGGGATTTGACAGTGGAAACAAGGACACAGAATGAGAAGGTTGCGACGCACTTGACTTTTGATCGGTTCGGTTTGGTTACGGATGAGAGAGCGACTGCACGGCAGGTTGGAACCACTGTCACTGTGAAGAAGTTGTTCTCCAACTTGCCTGTGAGATGTAAGGAGTTTCACCGCAACATTCGGAAGGAGTATGGGAAGTTGATTTCGTTACTGAATGCATATGCTCTTACTGCAAAAGGGGTTCGGTTGGTTTGTAAAAATACGACTGGAAAAAACAAAACTTCTGTAGTAGTTAAAACACAGGGAAGCGGTTCCCTCAAAGATAATATCATTACAGTGTTTGGCACGAACACTTTCACCTGCTTAGAGCCTGTGAGTCTATTTATATCAGAAACTTGCCAAGTGGATGGCTTTCTTTCTAAATCTGGCAATGGTAGTGGACGAAGTTTAGGTGATCGGCAATATTTTTTTGTTAATGGCCGACCTGTTGACATGCCAAAAGTCAGCAAGCTTGCGAATGAATTGTATAGATCTGCAAACTCAAAGCAATATCCAATTGTAATCATGAATTTTGTTGTTCCGACTAGGGTTTGTGATGTCAATGTGACCCCAGATAAAAGAAAAATATTTTTTTCTGATGAAGGGTCAATTTTAAATTCATTAAAAGAAGCTTTATTGAAGATATATTCTCCAAATCTTGCTAGCTTCTCGGTTCAGAAAGCTGAGGAACTCAGTCAAAAAGAAAATAACTCCAAGTTGTGTTCTCAACATGATCAGTCTTCTTCACAGTTTTCAACAAAGCGAGTATCACCAGAGGATAGTGATTGCAATAAAGAAACTAGCAGTGTTGTGCTTGTAGATGAAGAGACCTTAACATCCCCACGGACCCCAGCTACTGTTAATTTGAACAATGTTGATGCTTATAGTTCACTGAAGAGAGATTTTACCTTTAAATTCCATGGCGTGAAGAAAACCGATACCGTTTCTAGGAGCTGTAGTAATAATCATACAGCTGTAAATAGCAGCACTACTTATAATCGGCAGTCATCATCATTATACAATTCAACAGCGCATAAAAATGTTGGTGAAAGAACAGATTCAGCTCGTTCTGTGGGTCGTGTTCAGTCTCTGCTTAGTTCATTTGTTTCTGTAAACAAAAGAAAGCATGAAAGCATCAGTAATACCTTATCTGAGGTCCCTGTTCTCAGAAATGGGCCAACCATTCATCAATCAGTTGATCAAAAGAATAATTCAAATTCTACATTTGCAAAATCTTTAGTGAAATGTCATTTGGTTGATGACTTTGATGAAGTTGACCAGATTGAGTCAAAGTCAAAGCCTATCAATCGTATTCTGGTGGATGAACTCCATGGTGATTTAGAAGACTTTCCTGTTGCTAAAACTTCTATACAAGTTGAAAAGGACATAGCAAGATTTGAGACGCCTGAATCTGTTTCAAAATCAGCATTAAATCCATCATCGCCTGAAAAAATGAATGATGACATGTCAAATCCATTAAGTGCTTCTGAGCCACCTTCAGATTCACCGGTGTCTTCTTCTCGTACAAAGATGTGTTATGCGATGCAGTTTAGTTTTGAGGAACTAAAGAAGAAGAGGAAGCAAAAATTAGCAGCATTTCAAGCAAGCAAAAATACACTTGGAATATCGAAGACTAAAGGATGCTATGCTGATGCTACATTAGAGATTTCTCAAGTGGTAGAAGAGGATGCTAAAGCAAAAGCTTTATCTGCTGCAGCGAGCGAATTAGAAAAGTTATTCAAGAAGGAAGATTTTGGCCACATGAAGGTTATTGGGCAGTTCAATCTTGGATTTATCATTGGCAAGTTAGACCAAGACCTATTTATAGTTGATCAGCATGCTGCGGATGAGAAATACAATTACGAGCGTTTGTCACAGTCCACCATCTTGAACCAACAACCTCTACTAAGGCCAATTTTGGTAGAGTTATCTCCTGAAGAAGAAATAATTGCCTCAATGCACATGGATATTATCAGGAAAAACGGGTTTTCATTAGAAGAAGACTTGGATGCTCCTCCTGGGAACCGCTATAAATTAAGAGCCGTCCCCTTTAGTAAAAACATAACTTTTGGTGCTGCAGACGTGAAGGAGCTTATATCTATTTTGGCTGATGGTGAAGGCGAATGTTCGATTATGGGTACTTATAAGATGGACACTACGGATTCAGTATGCCCTCCAAGAGTACGTGCAATGTTAGCGTCGCGTGCCTGCAAATCATCTGTTAGGATTGGAGATCCACTTGGAAGAAACGAGATGCAAAAGATAGTTGAACATTTGAGGGGTCTAAGATCACCATGGAATTGTCCACATGGCCGACCGACAATGCGTCACTTGGTAGATTTAACAACCGTGCGTAGAAGGTCAAACGAAGAGGATTTAGTATAG 2778 40.35 MEGGDVSSPTITSPPIKAINKNAIHRICSGQVILDLPSAVKELVENSLDAGATSIEVLLKEYGEESFQVVDNGCGISPNNFKALALKHHTSKLTDFPDLQSLTTFGFRGEALSALCNLGDLTVETRTQNEKVATHLTFDRFGLVTDERATARQVGTTVTVKKLFSNLPVRCKEFHRNIRKEYGKLISLLNAYALTAKGVRLVCKNTTGKNKTSVVVKTQGSGSLKDNIITVFGTNTFTCLEPVSLFISETCQVDGFLSKSGNGSGRSLGDRQYFFVNGRPVDMPKVSKLANELYRSANSKQYPIVIMNFVVPTRVCDVNVTPDKRKIFFSDEGSILNSLKEALLKIYSPNLASFSVQKAEELSQKENNSKLCSQHDQSSSQFSTKRVSPEDSDCNKETSSVVLVDEETLTSPRTPATVNLNNVDAYSSLKRDFTFKFHGVKKTDTVSRSCSNNHTAVNSSTTYNRQSSSLYNSTAHKNVGERTDSARSVGRVQSLLSSFVSVNKRKHESISNTLSEVPVLRNGPTIHQSVDQKNNSNSTFAKSLVKCHLVDDFDEVDQIESKSKPINRILVDELHGDLEDFPVAKTSIQVEKDIARFETPESVSKSALNPSSPEKMNDDMSNPLSASEPPSDSPVSSSRTKMCYAMQFSFEELKKKRKQKLAAFQASKNTLGISKTKGCYADATLEISQVVEEDAKAKALSAAASELEKLFKKEDFGHMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNYERLSQSTILNQQPLLRPILVELSPEEEIIASMHMDIIRKNGFSLEEDLDAPPGNRYKLRAVPFSKNITFGAADVKELISILADGEGECSIMGTYKMDTTDSVCPPRVRAMLASRACKSSVRIGDPLGRNEMQKIVEHLRGLRSPWNCPHGRPTMRHLVDLTTVRRRSNEEDLV 925
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr12g00396 925 FunFam DNA mismatch repair protein PMS1 234 353 - -
Amtr12g00396 925 MobiDBLite consensus disorder prediction 599 638 - -
Amtr12g00396 925 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 16 916 IPR038973 GO:0006298(InterPro)|GO:0006298(PANTHER)|GO:0016887(PANTHER)|GO:0016887(InterPro)|GO:0032300(InterPro)|GO:0032300(PANTHER)|GO:0032389(PANTHER)|GO:0140664(InterPro)
Amtr12g00396 925 MobiDBLite consensus disorder prediction 367 397 - -
Amtr12g00396 925 MobiDBLite consensus disorder prediction 602 638 - -
Amtr12g00396 925 Pfam MutL C terminal dimerisation domain 722 878 IPR014790 GO:0005524(InterPro)|GO:0006298(InterPro)
Amtr12g00396 925 NCBIfam DNA mismatch repair endonuclease MutL 16 425 IPR002099 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Amtr12g00396 925 SUPERFAMILY DNA mismatch repair protein MutL 717 909 IPR037198 -
Amtr12g00396 925 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 38 139 - -
Amtr12g00396 925 CDD HATPase-MutL-MLH-PMS-like 24 205 - -
Amtr12g00396 925 Pfam DNA mismatch repair protein, C-terminal domain 228 347 IPR013507 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Amtr12g00396 925 SMART MutL-C-2 721 878 IPR014790 GO:0005524(InterPro)|GO:0006298(InterPro)
Amtr12g00396 925 SMART DNA-mis-repair-2 228 348 IPR013507 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Amtr12g00396 925 Gene3D - 761 873 IPR042121 -
Amtr12g00396 925 FunFam Mismatch repair endonuclease pms1, putative 761 873 - -
Amtr12g00396 925 Gene3D - 239 351 IPR014721 -
Amtr12g00396 925 SUPERFAMILY Ribosomal protein S5 domain 2-like 210 348 IPR020568 -
Amtr12g00396 925 Gene3D - 13 232 IPR036890 -
Amtr12g00396 925 FunFam Mismatch repair endonuclease pms1, putative 13 232 - -
Amtr12g00396 925 ProSitePatterns DNA mismatch repair proteins mutL - hexB - PMS1 signature. 106 112 IPR014762 -
Amtr12g00396 925 CDD MutL-Trans-hPMS-2-like 223 348 - -
Amtr12g00396 925 SUPERFAMILY ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase 30 231 IPR036890 -
Amtr12g00396 925 Gene3D - 724 909 IPR042120 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr12g00396 K10858 DNA mismatch repair protein PMS2
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr3:116382153 Amtr12g00396 Amtr-Chr12:13237221 dispersed