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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr12g00480 ATGGATGACGAGACACGTGATGTGAAGCTGGAGGTCATGGACAGCAGTAGCAGTAGCAATGGCGGTGGAGTTATGTCATATGATATGGTGTTACGTACGATGGCCTTTTGCTTTACCCTGGTAGCTGCGGTGGTTGCCGGTACTGACCAGGAAACAAAGAAGATTCCGATCAGAATTTCCGATAACTTTCCGCCGTTCAATGTTGCTGTCACGGCTAAGTGGCATTACATTTCTTCCACTGTATTCTTGGTTGTGGCAAATAGTGTGGCGTGTTCATACTCAATTGCTTCAATGGTACTTTCGATGAAAATGAAGATCCGAACCCATTTGGCTTTTCTCCTATCTGATGTGATCATGATGGCGTTGTTGTTCTCTGCCAACGGCGCTGCCACTGCGGTGGGCATGATCGGGCTCAATGGCAACTCTCATGCGCAATGGCACAAGGTGTGTTATATTTTCAGGAGTTATTGCCACCAGGGTGCAGCCTCCATAACCATGTCCTTCCTTGGCTCATTTGCGTTTTTATGGCTTGTGGTGTTTGCAATTTTAAACCTACATAAAAAGTCTACTTGA 573 46.25 MDDETRDVKLEVMDSSSSSNGGGVMSYDMVLRTMAFCFTLVAAVVAGTDQETKKIPIRISDNFPPFNVAVTAKWHYISSTVFLVVANSVACSYSIASMVLSMKMKIRTHLAFLLSDVIMMALLFSANGAATAVGMIGLNGNSHAQWHKVCYIFRSYCHQGAASITMSFLGSFAFLWLVVFAILNLHKKST 190
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr12g00480 190 PANTHER CASP-LIKE PROTEIN 1U1 16 186 IPR044173 -
Amtr12g00480 190 MobiDBLite consensus disorder prediction 1 20 - -
Amtr12g00480 190 Pfam Casparian strip membrane protein domain 26 172 IPR006702 -
Amtr12g00480 190 NCBIfam plant integral membrane protein TIGR01569 29 184 IPR006459 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr12g00480 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr12:15328108 Amtr07g01773 Amtr-Chr7:24638160 transposed