AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arla1g00072 | ATGTTTGCACGTACAATTCATCGCGGCAGCAGGATTCACAGTTATCGTTCTTCATTCTCACTCTCAAACTCTCTACGTTGCAACAATCACTCCTCCGCCGATCTTCTACGTCGCGAGATGAGTACGGAGACGGAGAGTATTGTTGCTCGGCTGAAGAGTTCTGGTTTATTTCAAACGAAGGGTCTTATTGGAGGGAAATGGACTGATGCGTACGATGGGAGGACTATTGAGGTTAACAATCCTGCTAGTGGGGATGTTATAGCTTCTGTTGCATGCATGGGTGAGAGGGAAACAAAAGATGCAATTTCTTCAGCCTATGAAGCTTTTAGACATTGGAGCAAGCTTACTGCTGCTGACAGGAGTGGTCGCCTACGTAATTGGTATAACTTACTGATGGCACATAAAGAAGAGCTTGGACAACTTATAACTTTGGAGCAAGGGAAACCTCTAAAAGAAGCCATTGGGGAGGTCACATATGGGGCTACTTTCATTGAGTTCTTTGCAGAGGAGGCAAAACGTGTTTATGGTGATATAATTCCATCACCACTGCCTGATCGCCGCCTGTTTGTTCTAAAGCAGCCTGTTGGTGTGGTTGGTGCAGTTACTCCGTGGAATTTCCCCTTGGCAATGATTACTCGCAAGGTTGGCCCTGCTCTTGCCTGTGGCTGTACCGTGGTCATAAAGCCTTCTGAGCTTACACCGTTGACTGCCTTAGCAGCAGCTGAGCTTGCCCTTCAATCTGGAATCCCACCAGGGGTCCTGAATGTGGTAATGGGAGATGCTCCTACTATCGGAACATCTTTAATGGAGAGCCCGCAGGTAAGGAAGATAACATTTACTGGTTCAACAGCTGTTGGAAAGAAATTGATGGCTGGTGCAGCCGAGACTGTAAAAAAGGTATCTCTTGAACTTGGTGGGAATGCACCTTGCATAATCTTCGATGATGCAGACCTGGAAGTGGCAGTGAAAGGGAGTTTGGCAACCAAATTTCGTAACAGTGGACAAACATGTGTATGTGCAAATAGAATACTTGTGCAAGAAGGCATATATGAGAAATTCACAAATGCCTTTTCAAAGGCTGTTCAGAACCTTAAAGTTGGCAATGGTTTTGATGAAGGTGTGACCCTGGGACCACTTATCAATGAGGCTGCTGTACAGAAGGTTGAATCGTTCGTGCAAGATGCTATCTCAAAGGGAGCCAAAACTCTTCTTGGTGGTAGGAGGCATAGCCTTGGCATGACTTTTTATGAGCCTACGGTTATCGGTGATGTCAAGAATGAGATGCTCATAGCAAGGCAGGAAGTATTTGGACCTGTTGCACCTGTTTTACGGTTTAAAACGGAAGAAGAAGCCATACAGATTGCTAATGACACTACTGCAGGATTAGCTGCTTACATATTCACAAACAGCATTCAACGTTCATGGCGTGTATCTGAAGCTCTTGAATACGGTATCGTTGGAGTAAACGAGGGATTGGTTTCTACAGAGGTGGCCCCGTTCGGAGGTTTCAAGCAGTCTGGTCTAGGACGCGAAGGTTCCAAATATGGATTGGACGAGTATCTTGAAATAAAGTACGTTTGTATGGGAAACATGGGCTAA | 1599 | 45.53 | MFARTIHRGSRIHSYRSSFSLSNSLRCNNHSSADLLRREMSTETESIVARLKSSGLFQTKGLIGGKWTDAYDGRTIEVNNPASGDVIASVACMGERETKDAISSAYEAFRHWSKLTAADRSGRLRNWYNLLMAHKEELGQLITLEQGKPLKEAIGEVTYGATFIEFFAEEAKRVYGDIIPSPLPDRRLFVLKQPVGVVGAVTPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELALQSGIPPGVLNVVMGDAPTIGTSLMESPQVRKITFTGSTAVGKKLMAGAAETVKKVSLELGGNAPCIIFDDADLEVAVKGSLATKFRNSGQTCVCANRILVQEGIYEKFTNAFSKAVQNLKVGNGFDEGVTLGPLINEAAVQKVESFVQDAISKGAKTLLGGRRHSLGMTFYEPTVIGDVKNEMLIARQEVFGPVAPVLRFKTEEEAIQIANDTTAGLAAYIFTNSIQRSWRVSEALEYGIVGVNEGLVSTEVAPFGGFKQSGLGREGSKYGLDEYLEIKYVCMGNMG | 532 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arla1g00072 | 532 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 306 | 495 | IPR016163 | GO:0016620(InterPro) | |
| Arla1g00072 | 532 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 330 | 341 | IPR016160 | GO:0016491(InterPro) | |
| Arla1g00072 | 532 | FunFam | Aldehyde dehydrogenase, putative | 498 | 524 | - | - | |
| Arla1g00072 | 532 | FunFam | Succinate-semialdehyde dehydrogenase I | 73 | 316 | - | - | |
| Arla1g00072 | 532 | PANTHER | SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL | 51 | 531 | IPR050740 | GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER) | |
| Arla1g00072 | 532 | Pfam | Aldehyde dehydrogenase family | 67 | 526 | IPR015590 | GO:0016491(InterPro) | |
| Arla1g00072 | 532 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 302 | 309 | IPR029510 | GO:0016491(InterPro) | |
| Arla1g00072 | 532 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 73 | 520 | IPR016162 | GO:0016491(InterPro) | |
| Arla1g00072 | 532 | FunFam | Succinate-semialdehyde dehydrogenase I | 306 | 495 | - | - | |
| Arla1g00072 | 532 | CDD | ALDH-F5-SSADH-GabD | 78 | 528 | - | - | |
| Arla1g00072 | 532 | NCBIfam | succinate-semialdehyde dehydrogenase | 78 | 524 | IPR010102 | GO:0009013(InterPro)|GO:0009450(InterPro) | |
| Arla1g00072 | 532 | SUPERFAMILY | ALDH-like | 38 | 529 | IPR016161 | GO:0016491(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arla1g00072 | K17761 | succinate-semialdehyde dehydrogenase, mitochondrial [EC:1.2.1.24] | ||||
| Arla1g00072 | K00135 | succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Arla | Arla-Chr1:1322119 | Arla6g00130 | Arla-Chr6:3380909 | dispersed | |
| Arla | Arla-Chr1:1322119 | Arla15g00383 | Arla-Chr15:9532937 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Arla1g00072 | . | 19 | 525 | Aldehyde Dehydrogenase gene family | AT1G79440 | 76.923 | 0.0 | 807.0 | |
| Arla1g00876 | ACH | 137 | 606 | Aldehyde Dehydrogenase gene family | AT2G14170 | 85.381 | 0.0 | 838.0 | |
| Arla1g01707 | ACH | 6 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 68.952 | 0.0 | 710.0 | |
| Arla2g01693 | ACH | 25 | 556 | Aldehyde Dehydrogenase gene family | AT5G62530 | 79.323 | 0.0 | 921.0 | |
| Arla2g01731 | ACH | 1 | 501 | Aldehyde Dehydrogenase gene family | AT1G74920 | 78.842 | 0.0 | 857.0 | |
| Arla2g01755 | . | 1 | 538 | Aldehyde Dehydrogenase gene family | AT3G48000 | 79.444 | 0.0 | 903.0 | |
| Arla11g00942 | . | 1 | 496 | Aldehyde Dehydrogenase gene family | AT2G24270 | 84.739 | 0.0 | 892.0 | |
| Arla12g00808 | . | 105 | 556 | Aldehyde Dehydrogenase gene family | AT5G62530 | 84.292 | 0.0 | 822.0 | |
| Arla14g00425 | . | 8 | 484 | Aldehyde Dehydrogenase gene family | AT4G36250 | 60.797 | 0.0 | 623.0 | |
| Arla15g00383 | ACH | 3 | 501 | Aldehyde Dehydrogenase gene family | AT1G74920 | 78.557 | 0.0 | 844.0 | |
| Arla15g00880 | . | 3 | 482 | Aldehyde Dehydrogenase gene family | AT1G44170 | 66.458 | 0.0 | 679.0 | |
| Arla3g00285 | . | 2 | 482 | Aldehyde Dehydrogenase gene family | AT1G44170 | 66.944 | 0.0 | 682.0 | |
| Arla3g02049 | . | 1 | 538 | Aldehyde Dehydrogenase gene family | AT3G48000 | 75.279 | 0.0 | 871.0 | |
| Arla3g02226 | . | 16 | 103 | Aldehyde Dehydrogenase gene family | AT1G79440 | 50.526 | 7.61e-26 | 99.0 | |
| Arla3g02302 | ACH | 1 | 483 | Aldehyde Dehydrogenase gene family | AT4G36250 | 54.451 | 0.0 | 555.0 | |
| Arla3g02693 | . | 278 | 316 | Aldehyde Dehydrogenase gene family | AT1G23800 | 79.487 | 1.36e-15 | 69.3 | |
| Arla6g00129 | ACH | 16 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 65.638 | 0.0 | 680.0 | |
| Arla6g00130 | . | 3 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 68.337 | 0.0 | 720.0 | |
| Arla6g00131 | . | 10 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 68.496 | 0.0 | 720.0 | |
| Arla6g00993 | ACH | 84 | 607 | Aldehyde Dehydrogenase gene family | AT2G14170 | 69.582 | 0.0 | 760.0 | |
| Arla6g01104 | . | 247 | 287 | Aldehyde Dehydrogenase gene family | AT3G48170 | 73.171 | 8.11e-15 | 71.6 | |
| Arla8g01480 | . | 1 | 496 | Aldehyde Dehydrogenase gene family | AT2G24270 | 88.911 | 0.0 | 932.0 | |
| Arla9g00297 | . | 327 | 483 | Aldehyde Dehydrogenase gene family | AT4G36250 | 57.962 | 3.37e-63 | 201.0 | |
| Arla9g00298 | . | 201 | 326 | Aldehyde Dehydrogenase gene family | AT4G36250 | 53.968 | 4.60e-44 | 148.0 | |
| Arla9g00299 | ACH | 4 | 192 | Aldehyde Dehydrogenase gene family | AT4G36250 | 50.265 | 2.63e-66 | 209.0 | |
| Arla9g00528 | . | 78 | 216 | Aldehyde Dehydrogenase gene family | AT1G23800 | 50.36 | 1.98e-36 | 134.0 | |
| Arla9g00973 | . | 1 | 545 | Aldehyde Dehydrogenase gene family | AT3G66658 | 80.917 | 0.0 | 931.0 |