AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arla5g00929 | ATGGGGATACTAACACTGCCATTGGTAACCTCTCTTCTCAAACCCCATAAACACCAATTTTCTCTTCTATTTACCACAACTATCCACCATCATCACCATCGTCGTACCCTCTTCCATCACCTCCCTCTACGACGCCGTTTCAGTAGAGCCACCATCTGTCGCTCTTCTTTCACAACTTCTGCAATTACTCAACATGAACAATCTTCAGTGACGTTAGATGATTCAAATTCAAATGCGGAGGAACGGCCGATTAAAGTCTCTATACCAACTTTTCAACAAGCCATTCAACGTCTCCAGGAGTACTGGGCATCTGTTGGATGTACTATAATGCAGTGCAGCAACACCGAGGTTGGAGCTGGGACTATGAATCCCTTGACATTTTTAAGAGTTCTTGGTCCAGAGCCCTGGAATGTTGCGTATGCAGAGCCAAGTATCCGGCCAGATGATAGTCGTTATGGTGAAAACCCTAATAGGCTTCAACGTCATACTCAATTCCAGGTTATATTAAAGCCTGATCCTGGAAATTCTCAAGACCTCTTCATCAGGAGTCTATCAGCCCTAGGCATAGATGTCAATGAACATGATATTCGTTTTGTGGAAGACAACTGGGAAAGCCCGGTACTTGGCGCTTGGGGATTGGGCTGGGAGATTTGGATGGACGGGATGGAGATTACACAGTTTACCTACTTCCAACAGGCTGGAAGTCTTCAGTTGATGCCGGTATCTGTTGAGATCACCTATGGTCTTGAACGAATCCTAATGTTACTTCAGGGAGTTGATCATTTCAAGAAAATTCAATATGCTGATGGAATCACTTATGGGGAGCTCTTCTCTGAGAACGAGAAAGAAATGAGTGCATATTATCTAGAGCATGCTAGTGTGGATCATATTCAGAAACACTTTGACTTTTTTGAGGCGGAAGCACGTGCTTTGCTTGACTTAGGCCTTGCAATACCTGCGTATGATCAGCTTCTCAAGACTTCTCATGCTTTTAATATCTTAGACTCTAGAGGCTTTGTAGGGGTAACAGAACGTGCTCGTTATTTTGGGCGGATGCGCAGTTTAGCGCGACAATGTGCCCTGCTCTGGTCGAATACAAGAGAGTCACTCGGATATCCATTAGGCGTTATTTCTCAAGCTAATAACCTCGTCATTCCCAAGGAAGTTCTAGAATCAGAAGCCACAAAGGTGTCTATTGAACCAAGATTGTTTCTTCTTGAGATCGGGACAGAAGAGTTACCACCAAATGATGTTGCTAGTGCAGGCCAGCAACTCAAAGATCTAATTGTGCAATTACTTGGAAAGCAAAGGTTGACTCATGGTGAAGTTCTTGTACTTGGCACCCCGAGGAGACTAGTAATAAGTGTTGAGAACCTATGCTCTAAGCAAGTGGCGAATGAAGTTGAGGTTCGAGGACCTCCAGTTTCAAAAGCGTTTGATAATGAAGGAAATCCGACTAAGGCAGCCGAAGGCTTTTGCCGTAGAAACTCCGTACCAGTGGACTCATTGTATACAAGAACTGAAGGTAAGACAGAGTATGTCTATGTTCGTGTGATGGAATCTGCACAGCTTGCTCTGGAGGTTTTATCAAAGGAGCTGCCTGGTGCAATTGCTAAAGTATCATTTCCGAAGTCCATGCGTTGGAACTCCGAGGTCATCTTTAGCCGACCTATTCGTTGGATTTTGGCGCTCCATGGTGATGCAGTGGTCCCTTTTGCGTGTGCTGGTATTTTGAGTGGTAATGTCTCTCATGGTCTCCGGAATACGACATTGTCTACAGTCATGGTTGACAGTGCAGAGTCTTATGCCAGTGTAATGCAACAAGCTGGAATTTCTGTTGACACTGAGCAACGAAAGAAAACAATTCTAGAACGATCAAACAATTTAGCAAAAGGTGTTGGTGGATGTCTTGTGATGCAGAGCAGCTTACTTGAGGAGGTTGTAAACCTTGTTGAGGCACCTGTTCCTGTGCTTGGGAAATTTTCAGAGTCCTTCCTAGTGCTCCCGAAAGATCTGTTAGTAATGGTTATGCAGAAGCATCAGAAGTACTTTGCATTGACAGATGATAAGGGAACTCTGCTGCCATACTTCATCGCCGTTGCAAATGGGGCAATTGACGAGTCGGTTGTTAGGAAAGGAAATGAAGCTGTACTCAGAGCTCGATATGAAGATGCTAAGTTCTTTTATGAACTAGACACTAGTAAAAGGTTTTCGGAGTTCCGGGGTCAACTGAATGGAATTCTATTTCATGAGAAACTTGGAACAATGGAGGATAAGATGATACGGGTCGAGAGTACTATTAGTGAACTTGGCTTGGCTCTAGGACTAAGTGAAGATAAGCTCCAGATTACTCGGGAAGCTGCATCACTGGCAATGTCAGATCTCTCAACTGCTGTTGTTATGGAGTTTACTTCTCTATCAGGAATAATGGCGCGCCATTATGCTCTTCGTGAAGGATACTCAGAACAGGTTTCAGAGGCGTTGTTTGAGATCACACTTCCTCGATTTTCTGGCGATATACTTCCAGAAACAGATGCAGGAACTGTATTATCGATTGCAGACAGGTTAGATAGCCTAGTTGGTTTGTTTGGAGCTGGTTGTCAACCAAGCTCGACCAATGACCCATTTGGTCTACGAAGAATCTCTTATGGTCTTGTCCAAGTCTTGGTGGAAAAAGATAGAAACTTGGATTTACGACATGCCTTGGACGTCGCCGCTTCTGTTCAGTCCATAAAAATAGACACTGTAACGATAAATGAGGTGCATCAATTTGTGACACGAAGACTCGAGCAATTTCTGGTCGATAAGGGAATAAACCCCGAAGTGGTTCGTGCAATTTTAGCAGAGCGTGCAAATTGGCCTGGTTTGGCTGCAAAATCAGCTTATAAAATGGATACGTTGTCACGAGGTGAGCTTTTGCCAAAAGTTGTTGAAGCATATGCGCGACCAACAAGAATTGTTCGTGGAAAAGATGTCGATGTTGACACAGAGGTGGATGAAGCGTTGTTCGAGACAAACGAAGAGAAAGCTTTATGGAGCGCTTTCTTGTCTGTTAGAAGCAAAATAAATCCGGGTGTTGAGGTGGATGATTTTGTCGAAACGTCTTTGCTACTAATTCAGCCGCTAGAAGACTTCTTCACTCACGTCTTTGTCATGGTGGAAGATGAAAGGATCAGAAAGAACAGACTTGCACTGCTTAGAGACATCTCTGAGCTCCCAAGAGGAATAGCTGACCTCTCAGTTTTGCCTGGATTTTGA | 3258 | 44.05 | MGILTLPLVTSLLKPHKHQFSLLFTTTIHHHHHRRTLFHHLPLRRRFSRATICRSSFTTSAITQHEQSSVTLDDSNSNAEERPIKVSIPTFQQAIQRLQEYWASVGCTIMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYAEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVNEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLMPVSVEITYGLERILMLLQGVDHFKKIQYADGITYGELFSENEKEMSAYYLEHASVDHIQKHFDFFEAEARALLDLGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCALLWSNTRESLGYPLGVISQANNLVIPKEVLESEATKVSIEPRLFLLEIGTEELPPNDVASAGQQLKDLIVQLLGKQRLTHGEVLVLGTPRRLVISVENLCSKQVANEVEVRGPPVSKAFDNEGNPTKAAEGFCRRNSVPVDSLYTRTEGKTEYVYVRVMESAQLALEVLSKELPGAIAKVSFPKSMRWNSEVIFSRPIRWILALHGDAVVPFACAGILSGNVSHGLRNTTLSTVMVDSAESYASVMQQAGISVDTEQRKKTILERSNNLAKGVGGCLVMQSSLLEEVVNLVEAPVPVLGKFSESFLVLPKDLLVMVMQKHQKYFALTDDKGTLLPYFIAVANGAIDESVVRKGNEAVLRARYEDAKFFYELDTSKRFSEFRGQLNGILFHEKLGTMEDKMIRVESTISELGLALGLSEDKLQITREAASLAMSDLSTAVVMEFTSLSGIMARHYALREGYSEQVSEALFEITLPRFSGDILPETDAGTVLSIADRLDSLVGLFGAGCQPSSTNDPFGLRRISYGLVQVLVEKDRNLDLRHALDVAASVQSIKIDTVTINEVHQFVTRRLEQFLVDKGINPEVVRAILAERANWPGLAAKSAYKMDTLSRGELLPKVVEAYARPTRIVRGKDVDVDTEVDEALFETNEEKALWSAFLSVRSKINPGVEVDDFVETSLLLIQPLEDFFTHVFVMVEDERIRKNRLALLRDISELPRGIADLSVLPGF | 1085 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arla5g00929 | 1085 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 758 | 1047 | IPR006194 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Arla5g00929 | 1085 | SUPERFAMILY | HD-domain-PDEase-like | 737 | 860 | - | - | |
| Arla5g00929 | 1085 | NCBIfam | glycine--tRNA ligase subunit beta | 404 | 1082 | IPR015944 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Arla5g00929 | 1085 | Pfam | Glycyl-tRNA synthetase alpha subunit | 91 | 368 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Arla5g00929 | 1085 | Hamap | Glycine--tRNA ligase alpha subunit [glyQ]. | 89 | 369 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Arla5g00929 | 1085 | Hamap | Glycine--tRNA ligase beta subunit [glyS]. | 401 | 1082 | IPR015944 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Arla5g00929 | 1085 | NCBIfam | glycine--tRNA ligase subunit alpha | 90 | 374 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Arla5g00929 | 1085 | Gene3D | Class II aaRS and biotin synthetases; domain 2 | 293 | 372 | - | - | |
| Arla5g00929 | 1085 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 164 | 184 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Arla5g00929 | 1085 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 143 | 158 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Arla5g00929 | 1085 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 221 | 241 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Arla5g00929 | 1085 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 195 | 219 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Arla5g00929 | 1085 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 244 | 259 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Arla5g00929 | 1085 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 329 | 345 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Arla5g00929 | 1085 | SUPERFAMILY | Class II aaRS and biotin synthetases | 90 | 369 | IPR045864 | - | |
| Arla5g00929 | 1085 | FunFam | Glycine--tRNA ligase alpha subunit | 83 | 292 | - | - | |
| Arla5g00929 | 1085 | Gene3D | Bira Bifunctional Protein; Domain 2 | 76 | 292 | IPR045864 | - | |
| Arla5g00929 | 1085 | PANTHER | GLYCYL-TRNA SYNTHETASE | 90 | 1085 | IPR006194 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0005739(PANTHER)|GO:0006426(InterPro)|GO:0009570(PANTHER) | |
| Arla5g00929 | 1085 | FunFam | Glycine--tRNA ligase, chloroplastic-mitochondrial 2 | 293 | 372 | - | - | |
| Arla5g00929 | 1085 | Pfam | Glycyl-tRNA synthetase beta subunit | 404 | 948 | IPR015944 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Arla5g00929 | 1085 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 90 | 364 | IPR006194 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Arla5g00929 | 1085 | CDD | GlyRS-alpha-core | 90 | 368 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arla5g00929 | K14164 | glycyl-tRNA synthetase [EC:6.1.1.14] | ||||
| Arla5g00929 | K01879 | glycyl-tRNA synthetase beta chain [EC:6.1.1.14] |