AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi18g00053 ATGTTATTGGGATTAAAGACAAAAAACAGGAAGAGCCCGTACGTCCAACTTGATTACGTTATCAATCTTGTAGAGATTAAGCCATGGCCTCCATCTCAGTCATTGAGATCACTTCGATCTGCATTGATACAATGGGAATATGGTGACAAGATTTCAGGGTCTACTAAAGCAGTTGTTCCTTCAATTGTTTCTGGTTTGAATGTTGGTGATGGTAAAATCGAATTCAATGAATCTTTTAGGCTTCATGTGACATTATTAAGGGATATGTCGATTAAGGCTGGGGACACCGAAACTTTCCAAAGGAATTGTATAGAGTTTAATTTGTACGAACCTCGAAGGGACAAAACGGTAAAAGGGCAGTTGTTGGCTACGGCAATCGTGGATTTTGCCGAGTATGGTATTGTGAAAGAGAGTTTGATGATAAGTGTGCCTATGACTTGCAAACGGACTTTTGGTAATACCGCTCAACCTATGCTCTTCTTTAAAATGCAGACTTCTGAGAGAAATAATCGTGTGAGGTCTTCATCGGGTGATGGTTTAATCAGAGAAGGATCGTTCGACAAGAACCACTCTGAGTCTGTTTCCGCTTTGATGAATGAAGAGTATGCTGAGGAAGCCGAGACTGCCTCCATTACCGATGACGATATTTCCTCGCAGTCTTCCATGGCTGCTGCTTCCTCAACCTTTGGATCCAATGGGAATTCAAGTCCTCAAAGAGAGAACGGATCTGAGGCGATATGTGGAAGCTCGGGAAAGGTTAATGATCAAGAAGTGGTGGTTCAAGAGAAAAGGGTTGCTGAATCCTTACATGAAGCAAATGCTTCATTGAAGGGAAGCTCACACACATCATCACCAGATTTGTATTCTGAAGTAATTAATGCTCGTGCCACTCTATCAAATCTACGTAACTCTAGATTCACAATGCTACCAGTGAACGCTGAATCTTACCGTGTGAAACTATCAAAGTCGTCTATTGCTAATGATGGAACAAATGAAGGGTTGAACGGAAACTCTAGAAATGACTCCTATGTCAATCTGGATGAGAAAGTTCCGGAAAGGACCACTATTGGTAAGAATGGCATCAAATCCATGGAATCTCTGGTGTATGAAGTGGACGAAAAACATTCTTGTATACGTTTAAAAAATCCGAATGCAAGTCAAAGTGAACGAGAAAGTCAAATCATTGGAGATCTTGGATCAGATGTTTTACATGCTGATAGATTAAAGAATTTGAAGTCTGTTAGTTCTTCATTGGATTCTGGTTATAGCAATGGATCAGATGTTTTACTTGAAAGATTAAAGAATTTGAAGTCAGTTAGTTCTTCATTGGATTCCGGTTTTAGTAATGGATCAGATGTTTTACTCGATAGATTAAAGAATTTGAAGCCGGTTGGCGCTTCATTGGATTCAGATTTTAGCAACGGATCTGTAAGGAGTGGCAAAGTTTTAGAGAAATTCAAAACGGTTGGTGTTCATGGTCAGAATGGAGGAAAAGATGTAAGCAAGGTACAACACTTGGAACAGAGGATACAATGTCTTGAAGACGAGCTGAGAGAAGCTGCAGCTATTGAGGTTAGTCTTTACTCGGTAGTCGCAGAGCATGGGAGTTCTGTTAATAAAGTCCATGCCCCAGCACGGCGTCTTTCTAGGCTGTACCTTCATGCATACAAAGAGAACTCTCAGTCTAGGAGAGCAACTTCAGCAAGAAGTATTGTGTCGGGATTGATTTTGGTCGCAAAAGCTTGCGGAAATGACGTTACAAGGTTGACTTTCTGGTTATCAAATGCCGTTGTACTAAGAGCAATAATACACAAATCTTTTGAGAAAGAGCAACCATCACTTTCTGCCGAACAATCAAGTAAAACGAATGCTGGGATCATTGAGAACCGAAAGAATGAGATCATATCTCAATTCAAATGGAAGAAAGAGTCTTCTATAAAAGAGAGTAGAATTGGTCTACCTGCAAATTCTAATGAATGGGAGGACCCTCGTACGGTTACTTCTATCTTGGAAAAAGTAGAATCTTGGATCTTCTCGCTCATTATTGAGTCCATCTGGTGGCAGACTCTTGCTCCTTATATGCAAACTGCAAAGGGTATCCTTAGAAGAGTTGTAGATTCAGAATCTAATAAAAAGTGTGAACCGTCACCTGGTTCATATGATCACGGGCAAGTGAACTCCTCGTTGGAGCTTTGGAAGACAGCTTTCATGGAAGTTTGTGAAAGAATTTGTCCTGTTCGAGCTGCAGGACATGATTGTGGTTGTTTGCGTATGCTATCTACGTTGATAATGAAGCAGTGTATGGGTAGATTAGATGTAGCCATGTTTAACGCTATTCTTCGGGAATCAGCTGATGAGGTTCCAACGGATCCTGTGTCGGACCCTATCAGTGATCCCATGGTTCTTCCTATTCCATCAGGGAAAGCAAGCTTTGGAGCCGGTGCACAACTGAAAAAGACGATCGGAAACTGGTCCAGATGGCTCACCGATCTATTTGGCATCGAGATCAATGACTCTTTAACAGACGAGAATGTACCTGACTACGATGAAAACATAGAAGGCTACGATACATCCTTCAACTCTTTTCATCTCCTCACTGCACTGAGTGAGCTCATGATGCTTCCAAAAGATATGCTCTTAAGCAACACGATCCGGAAAGAGGTGTGTCCTACTTTTGGTGTACCGTTAATCAAGAGGATTCTTGATAGTTTCGTCCCGGATGAGTTCTGCCCAGACCCTATTCCTGATGTGGTGCTTGAAGCCCTGGATTCAGAGGATTTACTCAAGAGCTGCGGCAAAGGTTGCGTCATCGGGTTCCCCTGTGCCGCACCTCCTATCGTATATCACCCACCTTCTGCATCTTTAATTGGATGCACCTTAGGAGACGATGGAAACCGGACTCGGTTATCACGCAGTGGATCTTCGATCCTACGAAAGTCAAATACAAGCGATGATGAACTTGATGAATTGGATTCACCGTTGACTTCGATCATCGACTCTTCTCGGATCGTAACCGCTTCAACAAAGCCGATCTGGGCGTTGAAAGATTGCGGGAGTCGCAATACCGTTAGGTATCAACTCCTTAGAGAGGTCTGGATGAACAGCGAGTAG 3111 42.33 MLLGLKTKNRKSPYVQLDYVINLVEIKPWPPSQSLRSLRSALIQWEYGDKISGSTKAVVPSIVSGLNVGDGKIEFNESFRLHVTLLRDMSIKAGDTETFQRNCIEFNLYEPRRDKTVKGQLLATAIVDFAEYGIVKESLMISVPMTCKRTFGNTAQPMLFFKMQTSERNNRVRSSSGDGLIREGSFDKNHSESVSALMNEEYAEEAETASITDDDISSQSSMAAASSTFGSNGNSSPQRENGSEAICGSSGKVNDQEVVVQEKRVAESLHEANASLKGSSHTSSPDLYSEVINARATLSNLRNSRFTMLPVNAESYRVKLSKSSIANDGTNEGLNGNSRNDSYVNLDEKVPERTTIGKNGIKSMESLVYEVDEKHSCIRLKNPNASQSERESQIIGDLGSDVLHADRLKNLKSVSSSLDSGYSNGSDVLLERLKNLKSVSSSLDSGFSNGSDVLLDRLKNLKPVGASLDSDFSNGSVRSGKVLEKFKTVGVHGQNGGKDVSKVQHLEQRIQCLEDELREAAAIEVSLYSVVAEHGSSVNKVHAPARRLSRLYLHAYKENSQSRRATSARSIVSGLILVAKACGNDVTRLTFWLSNAVVLRAIIHKSFEKEQPSLSAEQSSKTNAGIIENRKNEIISQFKWKKESSIKESRIGLPANSNEWEDPRTVTSILEKVESWIFSLIIESIWWQTLAPYMQTAKGILRRVVDSESNKKCEPSPGSYDHGQVNSSLELWKTAFMEVCERICPVRAAGHDCGCLRMLSTLIMKQCMGRLDVAMFNAILRESADEVPTDPVSDPISDPMVLPIPSGKASFGAGAQLKKTIGNWSRWLTDLFGIEINDSLTDENVPDYDENIEGYDTSFNSFHLLTALSELMMLPKDMLLSNTIRKEVCPTFGVPLIKRILDSFVPDEFCPDPIPDVVLEALDSEDLLKSCGKGCVIGFPCAAPPIVYHPPSASLIGCTLGDDGNRTRLSRSGSSILRKSNTSDDELDELDSPLTSIIDSSRIVTASTKPIWALKDCGSRNTVRYQLLREVWMNSE 1036
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi18g00053 1036 ProSiteProfiles C2 NT-type domain profile. 7 167 IPR019448 -
Armi18g00053 1036 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 12 1036 IPR021827 GO:0005643(InterPro)
Armi18g00053 1036 Coils Coil 503 523 - -
Armi18g00053 1036 MobiDBLite consensus disorder prediction 212 253 - -
Armi18g00053 1036 MobiDBLite consensus disorder prediction 170 253 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi18g00053 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
18898 Armi13g00023 Armi18g00053
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr17:42264176 Armi18g00053 Armi-Chr18:691894 dispersed
Armi Armi-Chr18:691894 Armi1g04290 Armi-Chr1:184684049 dispersed
Armi Armi-Chr13:307173 Armi18g00053 Armi-Chr18:691894 wgd
Armi Armi-Chr18:691894 Armi5g01015 Armi-Chr5:22866597 wgd