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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial16g02442 ATGGCTACAACTGTAGCTGGATCTACAGCTTCCTTTTCAACACGGTCCTTGTCAACTGGTGAGCCTGTTGTTTCAGTTGACTGGCTCCATTCCAATCTGCGTGAGCCAGATTTGAAGGTGCTTGATGCATCTTGGTACATGCCTGATGAACAGAGAAACCCACTCCAGGAATACCAGGTTGCCCATATTCCTGGTGCTCTTTTCTTTGACGTTGATGGGATATCCGACCGAACTACGAATTTGCCACACATGTTGCCATCCGAGGAAGCATTTGCTGCTGCTGTTTCCGCTCTCGGTATTGAAAACAAAGATGGAGTTGTTGTTTATGATGGTAAAGGGATCTTCAGTGCTGCCCATGGAGGGCTTCCGAGATGGCGTGCTTCCGGATTCGATGTTGAATCGAGTGCTTCTGGTGATGCAATTTTGAAAGCTAGTGCTGCCAGCGAGGCCATAGAGAAAGTTAAAAAGAACGCCGAGGACCTAACATATCAACATGTAGATGCTCGATCAAAAGCCAGGTTTGATGGTGTTGCAGCCGAGCCTCGAAAAGGAATAAGAAGTGGTCATGTTCCTGGGAGCAAGTGCATTCCTTTTGGCCTGGGACTTCATCGACTTGGGAAGACCGATGCTCCAGTTTATGATGGATCTTGGACAGAGTGGGGAGCACAAGAAGATACTCCTGTTGCAACTTCAGCTTCAGCTTCAAGTTGA 711 47.82 MATTVAGSTASFSTRSLSTGEPVVSVDWLHSNLREPDLKVLDASWYMPDEQRNPLQEYQVAHIPGALFFDVDGISDRTTNLPHMLPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAAHGGLPRWRASGFDVESSASGDAILKASAASEAIEKVKKNAEDLTYQHVDARSKARFDGVAAEPRKGIRSGHVPGSKCIPFGLGLHRLGKTDAPVYDGSWTEWGAQEDTPVATSASASS 236
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial16g02442 236 Gene3D - 17 140 IPR036873 -
Bial16g02442 236 ProSiteProfiles Rhodanese domain profile. 34 229 IPR001763 -
Bial16g02442 236 ProSitePatterns Rhodanese signature 1. 58 69 IPR001307 GO:0004792(InterPro)
Bial16g02442 236 ProSitePatterns Rhodanese C-terminal signature. 210 220 IPR001307 GO:0004792(InterPro)
Bial16g02442 236 SMART rhod-4 24 226 IPR001763 -
Bial16g02442 236 Pfam Rhodanese-like domain 25 120 IPR001763 -
Bial16g02442 236 PANTHER THIOSULFATE SULFERTANSFERASE 200 233 IPR045078 GO:0004792(PANTHER)|GO:0005739(PANTHER)|GO:0016783(InterPro)
Bial16g02442 236 SUPERFAMILY Rhodanese-Cell cycle control phosphatase 152 231 IPR036873 -
Bial16g02442 236 SUPERFAMILY Rhodanese-Cell cycle control phosphatase 21 135 IPR036873 -
Bial16g02442 236 Gene3D - 143 200 IPR036873 -
Bial16g02442 236 Coils Coil 144 164 - -
Bial16g02442 236 CDD TST-Repeat-1 23 129 - -
Bial16g02442 236 Gene3D - 201 234 IPR036873 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial16g02442 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
189183 Bial4g03011 Bial16g02442
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr16:63796070 Bial4g03016 Bial-Chr4:69100965 dispersed
Bial Bial-Chr16:63796070 Bial4g03011 Bial-Chr4:69062254 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bial10g03938 BST 1 456 Sulfurtransferasese/Rhodanese gene family AT4G01050 53.747 1.13e-139 407.0
Bial12g00452 BST,WGDA 80 461 Sulfurtransferasese/Rhodanese gene family AT2G40760 71.99 0.0 562.0
Bial13g02184 BST,WGDA 10 116 Sulfurtransferasese/Rhodanese gene family AT5G66040 50.467 1.16e-36 120.0
Bial2g01038 BST,WGDA 17 143 Sulfurtransferasese/Rhodanese gene family AT5G03455 58.647 1.01e-44 143.0
Bial24g00128 . 25 299 Sulfurtransferasese/Rhodanese gene family AT5G19370 56.429 4.11e-108 314.0
Bial24g00409 BST,WGDA 80 461 Sulfurtransferasese/Rhodanese gene family AT2G40760 72.251 0.0 568.0
Bial24g00741 . 43 180 Sulfurtransferasese/Rhodanese gene family AT5G23060 35.507 3.02e-13 63.9
Bial1g01953 BST,WGDA 80 142 Sulfurtransferasese/Rhodanese gene family AT2G17850 34.921 2.18e-07 44.3
Bial6g00206 BST 1 230 Sulfurtransferasese/Rhodanese gene family AT2G42220 64.224 2.09e-108 310.0
Bial12g01496 . 15 383 Sulfurtransferasese/Rhodanese gene family AT5G23060 64.151 6.33e-167 470.0
Bial4g03016 . 1 379 Sulfurtransferasese/Rhodanese gene family AT1G79230 72.063 0.0 577.0
Bial4g03011 BST 1 379 Sulfurtransferasese/Rhodanese gene family AT1G79230 72.063 0.0 577.0
Bial6g02821 BST,WGDA 350 564 Sulfurtransferasese/Rhodanese gene family AT1G09280 30.0 7.37e-17 78.2
Bial6g02822 BST,WGDA 321 564 Sulfurtransferasese/Rhodanese gene family AT1G09280 29.084 2.02e-19 85.9
Bial19g03771 . 77 438 Sulfurtransferasese/Rhodanese gene family AT1G17850 62.912 2.32e-172 488.0
Bial7g03876 . 77 438 Sulfurtransferasese/Rhodanese gene family AT1G17850 62.912 3.53e-172 487.0
Bial22g02836 BST 439 564 Sulfurtransferasese/Rhodanese gene family AT1G09280 31.618 2.85e-12 62.0
Bial22g03529 BST 1 456 Sulfurtransferasese/Rhodanese gene family AT4G01050 53.291 3.82e-142 413.0
Bial10g03230 BST 439 564 Sulfurtransferasese/Rhodanese gene family AT1G09280 31.618 2.85e-12 62.0
Bial17g01222 . 54 292 Sulfurtransferasese/Rhodanese gene family AT4G24750 47.917 3.21e-65 202.0
Bial17g00782 BST 1 230 Sulfurtransferasese/Rhodanese gene family AT2G42220 64.935 3.14e-109 313.0
Bial14g00734 BST,WGDA 20 143 Sulfurtransferasese/Rhodanese gene family AT5G03455 54.762 2.08e-38 127.0
Bial10g01210 BST 35 198 Sulfurtransferasese/Rhodanese gene family AT3G08920 66.463 5.02e-82 241.0
Bial5g00007 BST 208 348 Sulfurtransferasese/Rhodanese gene family AT5G23060 33.803 4.00e-19 87.4
Bial5g01381 . 54 292 Sulfurtransferasese/Rhodanese gene family AT4G24750 75.314 2.21e-138 390.0
Bial7g01166 . 352 572 Sulfurtransferasese/Rhodanese gene family AT1G09280 28.879 3.21e-17 78.2
Bial7g02874 ACH,BST,WGDA 95 160 Sulfurtransferasese/Rhodanese gene family AT5G19370 39.189 3.09e-08 49.3
Bial8g02803 BST 72 278 Sulfurtransferasese/Rhodanese gene family AT5G55130 25.641 2.57e-11 63.5
Bial8g03001 BST 1 464 Sulfurtransferasese/Rhodanese gene family AT5G55130 68.143 0.0 645.0
Bial4g02682 BST 16 581 Sulfurtransferasese/Rhodanese gene family AT1G09280 64.398 0.0 771.0
Bial16g02308 BST 16 581 Sulfurtransferasese/Rhodanese gene family AT1G09280 65.271 0.0 775.0
Bial23g00545 . 45 181 Sulfurtransferasese/Rhodanese gene family AT4G35770 59.854 4.64e-56 173.0
Bial23g00401 BST 87 242 Sulfurtransferasese/Rhodanese gene family AT4G01050 39.873 2.28e-28 112.0
Bial17g03000 BST 208 348 Sulfurtransferasese/Rhodanese gene family AT5G23060 33.803 5.64e-19 87.0
Bial20g02426 BST 72 278 Sulfurtransferasese/Rhodanese gene family AT5G55130 25.0 2.48e-11 63.5
Bial12g00121 . 94 299 Sulfurtransferasese/Rhodanese gene family AT5G19370 66.827 3.51e-106 309.0
Bial20g02602 BST 2 464 Sulfurtransferasese/Rhodanese gene family AT5G55130 68.298 0.0 648.0
Bial14g02579 BST,WGDA 444 564 Sulfurtransferasese/Rhodanese gene family AT1G09280 32.54 4.32e-12 61.2
Bial14g02578 BST,WGDA 337 564 Sulfurtransferasese/Rhodanese gene family AT1G09280 29.614 1.45e-17 80.5
Bial19g02855 ACH,BST,WGDA 95 160 Sulfurtransferasese/Rhodanese gene family AT5G19370 39.189 3.09e-08 49.3
Bial10g00027 ACH,BST,WGDA 1 123 Sulfurtransferasese/Rhodanese gene family AT2G17850 45.968 6.51e-31 106.0
Bial23g01070 . 81 222 Sulfurtransferasese/Rhodanese gene family AT5G55130 32.168 2.83e-12 66.6
Bial22g00806 BST 35 198 Sulfurtransferasese/Rhodanese gene family AT3G08920 65.854 4.29e-81 239.0
Bial8g01677 . 1 222 Sulfurtransferasese/Rhodanese gene family AT4G27700 68.282 1.93e-109 311.0
Bial16g02442 BST 58 379 Sulfurtransferasese/Rhodanese gene family AT1G79230 58.696 1.02e-124 357.0
Bial24g01382 ACH,BST,WGDA 15 310 Sulfurtransferasese/Rhodanese gene family AT5G23060 61.409 2.09e-117 353.0
Bial19g01323 ACH,BST,WGDA 23 156 Sulfurtransferasese/Rhodanese gene family AT2G17850 52.593 4.02e-44 140.0
Bial11g01328 . 81 216 Sulfurtransferasese/Rhodanese gene family AT5G55130 32.847 2.49e-12 67.0
Bial11g00733 . 45 181 Sulfurtransferasese/Rhodanese gene family AT4G35770 59.854 7.20e-57 174.0
Bial11g00580 BST 54 242 Sulfurtransferasese/Rhodanese gene family AT4G01050 35.751 3.48e-28 111.0