AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial16g02445 ATGAGCAGCAGTTGGCGGAGTCTAATTCTCCGTATCGGCGAGAAGTCACCGGAATACGCCGGCGTAATTGACTTCAAAGACCACATTGACGCGTGTTTCGGTGCTGTTAGACGGGAATTGGATCATTCCGAAGATGATATCTTAACTATTGGGCTATTGAATCTAGAAAATGAGAATTTTGTTAAAAAGCTATTGGAGAGTACTCAAAAGAGTTTGCAGGATGCACTAGACTCTGGAGATTGCAACAAGATTCGTGTATCGTTACGGTTTCTAACTGTTTTGATGTGTAGCAAAGTGATCCAACCAAGCTCGTTAGTGGTGATTTTTGAGACATTATTATCTGCTGCTGCAACCATAGTGGATGATGAAAAAGGGAACCCTTCATGGCAGGCGCGTGCTGATTTTTATATAACTTGTATTCTTTCCTGTCTTCCTTGGGGTGGAGCTGAACTCGTTGAGCAAATTCCTGAAGAAATTGAAAGAGTTATGGCTGGGATACAGGCTTATTTAAGTATCAGAAGACATGTTTCTGATGTTGGTCTATCTGTGTTTGAAGATATTAACAAATCCAACAAACTTCATGTTGAACAAGATTTCGTGGAAGACTTATGGAGTCGAATTCAAGATCTCTCCAAGAACAGCTGGAAACTTGAGAGTGCTAGTCGAAAGGAATGTGCTGCATGCATGGTTGGCCTACCTGTCCCTTTCAGATATGAGTATCTCATGGCTGAAACCATTTTTTCCCAGTCTCTTCCAGGTGCCTTTCCTGCAGTTGTAGCTGGGGCTGTGCGTGCACTATTTGATAGGATAAGTGAGTTAGATATGGAGTGTAGGTTTCGCCTCATTCTCTGGTTCTCACACCATTTATCAAACTTTCAATTCATCTGGCCATGGGACGAATGGGCTTACGTCTTGGAGCTTCCAAAATGGGCTCCACAACGTGTATTTGTCCAGGAGGTTCTTGATAGAGAAGTCCGTTTATCATACTGGGATAAAGTGAAGCAGAGCATTGAAAGTACTCCAGCTTTAGAGGAGTTACTTCCTCCAAAAGGTGGTCCCAACTTTAGATACGGTTCAGACGATGGTGATAAAACAGAATATACACTTTCAAAGGAACTTAACAGTATGGTCAAAGGAAGAAAAACTGCCCGTGAAATCATTATTTGGCTTGAAGAAACCATAATTCCAGTCAATGGACTAGATGTTTGCTTAAGAGTAGTTGTTCAAACCCTTTTGGATATTGGATCAAAAAGCTTTACTCATTTGATTACTGTGTTAGAGAGATACGGACAAGTAATTGCCAAAATTTGTTCAAATGAAGAAACACAACTCATGTTAATATCTGAAGTTGGTTCGTTTTGGAAAAATAGTGCTCAAACAACCGCTATCACCATTGACCGAATGATGGGTTATCGTTTAATTTCAAATTTAGCTATTGTGAAATGGGTTTTTTCTCCGTCAAATGTTGATCAGTTTCACACCACTGATCGATTGTGGGAGATACTCAGAAATGCATTGAATAAGACATATAATCGTATTTCTGATTTAAGGAAAGAGATTAATAATTTGAAAAAGAGTGTTGCAAAGGCTGAGAAACTTGCAGCCATGGCTAAAGCTGAGCTGGATGGAGCTGAAAGTAAGCTTATGCTTGTGGATGGTGAGCCGGTTGTTGGTGAGAATCCAGCTAAGATGAAGCGTTTGAAATCAAATGCTGAAAGGACAAAAGAAGATGAGATCTCTACTCGTGAATCTTTAGAGTCAAAAGAGGCTCTTTTTGCACGAGCCCTTGAAGAGAACGAGGCTTTGTTTCTGTCTTTGTACAAACATTTCTCCAATGTTTTGATGGACCGCCTCCATGAAACATTTGGAGAGAAAACATTGGACCAACCAGGTGGTGATTCAGAAGCAATGGCGGTTGATGAAGAAGACTCTTCTGCAATGGAGACTGATAAGGAAAATGGGAATGCTAAAAGAAATGCCGGTTATACCATTGGGGAAAAGGAACAATGGTGCTTGTCAACTCTTGGTTATGTCAAGGCTTTTTCAAGGCAATATGCTTCTGAGATATGGCCACACATGGACAAGTTAGAGGAGGAGGTCGTAACTGAAAGTGTTCATCCTTTATTCAGAAAAGCAGTTTATTCTGGTTTGCGTGTGCACACCGAACAATGA 2172 40.75 MSSSWRSLILRIGEKSPEYAGVIDFKDHIDACFGAVRRELDHSEDDILTIGLLNLENENFVKKLLESTQKSLQDALDSGDCNKIRVSLRFLTVLMCSKVIQPSSLVVIFETLLSAAATIVDDEKGNPSWQARADFYITCILSCLPWGGAELVEQIPEEIERVMAGIQAYLSIRRHVSDVGLSVFEDINKSNKLHVEQDFVEDLWSRIQDLSKNSWKLESASRKECAACMVGLPVPFRYEYLMAETIFSQSLPGAFPAVVAGAVRALFDRISELDMECRFRLILWFSHHLSNFQFIWPWDEWAYVLELPKWAPQRVFVQEVLDREVRLSYWDKVKQSIESTPALEELLPPKGGPNFRYGSDDGDKTEYTLSKELNSMVKGRKTAREIIIWLEETIIPVNGLDVCLRVVVQTLLDIGSKSFTHLITVLERYGQVIAKICSNEETQLMLISEVGSFWKNSAQTTAITIDRMMGYRLISNLAIVKWVFSPSNVDQFHTTDRLWEILRNALNKTYNRISDLRKEINNLKKSVAKAEKLAAMAKAELDGAESKLMLVDGEPVVGENPAKMKRLKSNAERTKEDEISTRESLESKEALFARALEENEALFLSLYKHFSNVLMDRLHETFGEKTLDQPGGDSEAMAVDEEDSSAMETDKENGNAKRNAGYTIGEKEQWCLSTLGYVKAFSRQYASEIWPHMDKLEEEVVTESVHPLFRKAVYSGLRVHTEQ 723
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial16g02445 723 Gene3D - 360 714 - -
Bial16g02445 723 MobiDBLite consensus disorder prediction 625 658 - -
Bial16g02445 723 Pfam MIF4G like 370 688 IPR015174 GO:0016070(InterPro)
Bial16g02445 723 SUPERFAMILY ARM repeat 352 713 IPR016024 -
Bial16g02445 723 Coils Coil 506 547 - -
Bial16g02445 723 Coils Coil 568 588 - -
Bial16g02445 723 SUPERFAMILY ARM repeat 219 348 IPR016024 -
Bial16g02445 723 Gene3D - 249 351 - -
Bial16g02445 723 SMART if4-15 2 211 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Bial16g02445 723 SUPERFAMILY ARM repeat 2 223 IPR016024 -
Bial16g02445 723 PANTHER CAP BINDING PROTEIN 221 717 IPR027159 GO:0000184(PANTHER)|GO:0000339(InterPro)|GO:0000339(PANTHER)|GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005845(PANTHER)|GO:0005846(InterPro)|GO:0005846(PANTHER)|GO:0006406(InterPro)
Bial16g02445 723 Gene3D - 4 227 - -
Bial16g02445 723 Pfam MIF4G like 208 337 IPR015172 GO:0016070(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial16g02445 K12882 nuclear cap-binding protein subunit 1
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Event-related genes

Select Gene_1 Gene_2 Event_name
189186 Bial4g03019 Bial16g02445
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr16:63829276 Bial4g03019 Bial-Chr4:69182896 wgd