AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial16g02723 ATGCTTAACTTGGCCAATCTGGCTGAAGAGGTTCAGATTGCTTACCGTAGAAGAATCAAACTGAAAAAGGGTGATTTCGGTGATGAAGCTAATGCAACAACCGAGTCGGATATTGAAGAGACTCTTAAGAAGCTTGTGTATAAGCTTAACAAGTCCCCTGAAGAGGTTTTTGATGCACTCAAAAACCAAACTGTTGACTTGGTGTTGACTGCTCATCCGACTCAATCGGTCCGCCGATCTCTGCTTCAGAAGCATGGAAGGATCCGGAACTGTCTGGCTCAGTTATATGCGAAAGACATCACTCCCGATGACAAACAGGAGCTCGATGAGGCCTTACACCGTGAAATTCAAGCTGCTTTCCGTACTGATGAGATCAGAAGGACTCAACCGACCCCACAAGATGAAATGAGAGCTGGAATGAGTTACTTTCATGAGACAATATGGAAGGGTGTTCCGAAATTCTTAAGGCGTGTTGACACTGCTTTGAAGAATATTGGGATTAACGAGCGTGTTCCTTATAATGCGCCTCTTATTCAGTTTTCTTCATGGATGGGTGGTGATCGTGATGGAAATCCAAGGGTAACTCCTGAGGTAACAAGGGATGTTTGCTTACTAGCAAGAATGATGGCTGCAAACATGTACTTTTCTCAGATTGAGGATCTCATGTTTGAGATGTCCATGTGGCGTTGTACCGATGAACTTCGCGTTCGAGCTGAAGAACTTTTTAAATCAGCTAGAAGAGATGTGAAACACTACATAGAGTTCTGGAAACAGGTTCCTCCAACTGAACCTTACCGTGTAATTCTTGGTGATGTAAGGGATAAGCTATATAGCACACGTGAACGTGCCCGCCATTTATTAGCCCATGATATATCCGACATTCCAGAAGAGGCGGTTTACACCAATGTTGAACAGTTCTTGGAACCTTTGGAGCTATGCTACAGATCACTATGCGCGTGTGGTGACCGTGTGATTGCTGATGGAAGCCTTCTAGATTTTCTAAGACAGGTGTCAACATTCGGGCTGTCGCTAGTCAAACTTGATATACGACAGGAATCTGATCGCCATACGGACGTCCTCGATGCCATCACTCAACATCTCGAAATCGGGTCTTACCGTGAATGGTCTGAAGAGAAACGCCAAGAATGGCTTCTTGCTGAACTCAGTGGAAAACGTCCTCTTTTTGGTTCTGATCTTCCAAAAACTGAGGAAATTAAGGATGTTCTGGACACGTTTAGTGTGTTAGCTGAACTCCCAGCTGACTGTTTCGGTGCTTACATCATCTCAATGGCCACATCACCATCCGATGTCCTCGCCGTCGAGCTTCTTCAACGCGAATGCCACGTAAAACAGCCGTTACGCGTGGTCCCACTTTTCGAAAAGCTTGCTGACCTGGAGGCCGCTCCGGCCGCCATGGCCCGCTTGTTCTCAGTTGACTGGTACAAAAACCGGATTAACGGGAAACAAGAAGTCATGATCGGGTACTCGGATTCGGGAAAAGACGCGGGTCGGTTTTCGGCTGCGTGGCAGCTTTACAAAGCTCAAGAAGAGCTGAAAAACGTTGCTAAGGAGTTTGGTGTTAAACTTGTTATGTTTCACGGGCGTGGTGGAACTGTTGGTAGAGGTGGCGGGCCCACCCATCTGGCTATCTTATCTCAACCGGCTGAGACCATTCAAGGGTCGTTGAGAGTCACGGTTCAGGGTGAGGTTATAGAGCAGTCTTTTGGTGAAGAACATTTGTGTTTCAGAACCCTTCAAAGGTTCTGTGCAGCTACACTTGAGCACGGGATGAACCCGCCAATCTCACCGAGGCCCGAGTGGCGTGAACTTATGGATCAGATGGCAGCTGTTGCAACCGAACAGTATCGGTCTATTGTGTTCAAGGAGCCACGTTTTGTCGAGTATTTCCGACTTGCAACACCGGAGCTTGAATACGGGCGTATGAACATTGGGAGCCGACCGTCAAAACGAAAGCCGAGTGGCGGGATAGAATCTCTTCGGGCCATTCCATGGATCTTTGCATGGACCCAAACCCGGTTCCATCTCCCAGTTTGGCTCGGGTTCGGGGCTGCATTCAAACATGCGATTCAAAAAGACAGCAAGAACCTTCAAATGCTTCAAGAAATGTACAAAACGTGGCCGTTTTTCCGGGTGACAATTGATTTAGTTGAAATGGTGTTTGCTAAAGGTGACCCTGGTATTGCGGCCCTGAATGACAAGTTACTTGTTTCTGAAGATTTATGGCCTTTCGGGGAATCTTTAAGAGCAAACTATGAAGAAACCAAAGACTATCTCCTCAAGATTGCTGGACACAAAGACCTACTCGAGGGCGATCCCTACTTGAAACAAAGACTCAAGTTGCGTGATTCATACATCACAACCTTAAACGTTTGCCAAGCATACACTCTTAAACGGACACGTGACCCGAACTATCACGTGACCTTAAGGCCTCATATCTCCAAAGAATATGCCGAGCCGAGCAAACCTGCTGATGAACTCATCCACTTGAACCCAACCAGTGAGTACGCGCCTGGTTTGGAGGACACGCTCATCTTGACCATGAAGGGTATTGCTGCAGGAATGCAGAACACCGGTTAA 2598 47.04 MLNLANLAEEVQIAYRRRIKLKKGDFGDEANATTESDIEETLKKLVYKLNKSPEEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLAQLYAKDITPDDKQELDEALHREIQAAFRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANMYFSQIEDLMFEMSMWRCTDELRVRAEELFKSARRDVKHYIEFWKQVPPTEPYRVILGDVRDKLYSTRERARHLLAHDISDIPEEAVYTNVEQFLEPLELCYRSLCACGDRVIADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTDVLDAITQHLEIGSYREWSEEKRQEWLLAELSGKRPLFGSDLPKTEEIKDVLDTFSVLAELPADCFGAYIISMATSPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAAMARLFSVDWYKNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELKNVAKEFGVKLVMFHGRGGTVGRGGGPTHLAILSQPAETIQGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPEWRELMDQMAAVATEQYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHAIQKDSKNLQMLQEMYKTWPFFRVTIDLVEMVFAKGDPGIAALNDKLLVSEDLWPFGESLRANYEETKDYLLKIAGHKDLLEGDPYLKQRLKLRDSYITTLNVCQAYTLKRTRDPNYHVTLRPHISKEYAEPSKPADELIHLNPTSEYAPGLEDTLILTMKGIAAGMQNTG 865
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial16g02723 865 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 68 79 IPR018129 -
Bial16g02723 865 Gene3D Phosphoenolpyruvate-pyruvate domain 208 343 - -
Bial16g02723 865 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 491 503 IPR033129 -
Bial16g02723 865 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 1 865 IPR021135 GO:0005829(PANTHER)|GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0008964(PANTHER)|GO:0009507(PANTHER)|GO:0015977(InterPro)|GO:0048046(PANTHER)|GO:0048366(PANTHER)
Bial16g02723 865 FunFam Phosphoenolpyruvate carboxylase 1 208 343 - -
Bial16g02723 865 Pfam Phosphoenolpyruvate carboxylase 1 865 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Bial16g02723 865 SUPERFAMILY Phosphoenolpyruvate-pyruvate domain 1 865 IPR015813 GO:0003824(InterPro)
Bial16g02723 865 Hamap Phosphoenolpyruvate carboxylase [ppc]. 1 865 IPR022805 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Bial16g02723 865 PRINTS Phosphoenolpyruvate carboxylase signature 340 360 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Bial16g02723 865 PRINTS Phosphoenolpyruvate carboxylase signature 531 560 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Bial16g02723 865 PRINTS Phosphoenolpyruvate carboxylase signature 67 80 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Bial16g02723 865 PRINTS Phosphoenolpyruvate carboxylase signature 663 689 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Bial16g02723 865 PRINTS Phosphoenolpyruvate carboxylase signature 180 195 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Bial16g02723 865 PRINTS Phosphoenolpyruvate carboxylase signature 489 509 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Bial16g02723 865 PRINTS Phosphoenolpyruvate carboxylase signature 120 136 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial16g02723 K01595 phosphoenolpyruvate carboxylase [EC:4.1.1.31]
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Event-related genes

Select Gene_1 Gene_2 Event_name
28250 Bial16g02723 Bial3g01741
189314 Bial4g03340 Bial16g02723
363342 Bial12g02348 Bial16g02723
368938 Bial16g02723 Bial24g02207
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr16:70059837 Bial3g01741 Bial-Chr3:60237211 dispersed
Bial Bial-Chr12:53763346 Bial16g02723 Bial-Chr16:70059837 wgd
Bial Bial-Chr16:70059837 Bial24g02207 Bial-Chr24:52635246 wgd
Bial Bial-Chr16:70059837 Bial4g03340 Bial-Chr4:76178231 wgd