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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial22g00961 ATGGGTGCTGCTTCATCTGTTCCTGAAAACTCTGTTCACGAGTTCACTGTCAAAGATGCTAAAGGAAGAGATGTAGATCTCAGTCTCGAGATCTTGGCATTTCCATGCAATCAATTCTTGTCCCAAGAACCCGAATCAAGTGAGAAAGTGGAAGAATTCGCGTGTTCGAGGTTTAACGCTCAGTATCCCATCTTCAATAAGGTTCGTGTCAATGGGCCCAAAGCAGCACCTTTGTACAAGTTTTTAAAAGCCAAGAAAGGAGGGTTTTGTGGTTCAAGAATCAAATGGAACTTCACAAAGTTTCTTGTGGATAAAGAAGGCCAAGTCATAGGCCGTTATGGACCAACAACTTCACCTTTATCCATCCAGGGTGATATTCAAAAGGCGTTGAATGCGCAGTGA 402 43.03 MGAASSVPENSVHEFTVKDAKGRDVDLSLEILAFPCNQFLSQEPESSEKVEEFACSRFNAQYPIFNKVRVNGPKAAPLYKFLKAKKGGFCGSRIKWNFTKFLVDKEGQVIGRYGPTTSPLSIQGDIQKALNAQ 133
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial22g00961 133 ProSitePatterns Glutathione peroxidases signature 2. 32 39 IPR029760 -
Bial22g00961 133 ProSiteProfiles Glutathione peroxidase profile. 1 133 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Bial22g00961 133 PRINTS Glutathione peroxidase family signature 29 45 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Bial22g00961 133 PRINTS Glutathione peroxidase family signature 94 103 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Bial22g00961 133 CDD GSH-Peroxidase 11 126 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Bial22g00961 133 SUPERFAMILY Thioredoxin-like 11 130 IPR036249 -
Bial22g00961 133 Gene3D Glutaredoxin 28 132 - -
Bial22g00961 133 PIRSF Glutathion-perox 26 133 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Bial22g00961 133 PIRSF Glutathion-perox 3 29 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Bial22g00961 133 Pfam Glutathione peroxidase 25 83 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Bial22g00961 133 PANTHER GLUTATHIONE PEROXIDASE 29 131 IPR000889 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0005829(PANTHER)|GO:0006979(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial22g00961 K00432 glutathione peroxidase [EC:1.11.1.9]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr22:9258809 Bial3g02189 Bial-Chr3:66032080 dispersed
Bial Bial-Chr10:13682578 Bial22g00961 Bial-Chr22:9258809 wgd
Bial Bial-Chr22:9258809 Bial5g01006 Bial-Chr5:14365641 wgd