AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00116 GTCAAAACAGAGTAGAGAGAAAGGTCAGAGATTCACAACCCATTTTCCCCTTCAAATTCTTCATACCTTCCATCTCTGGAAATCCAAAAGCCATCATCATCATCATCAATATTCTGTGTTTTGGATCCATTAATCCATCTCCATCTTCATCTTCATCTTGTTGATTTGATTATTAGTTATGAATACGAGTAATCCAACTACTCCGATGAATGCAAACGCTCCGTCGTCGAGCTCCGGTGGCGCCGGATCCCCCGATTCAGCTCCAAGGAGAAACTCTAAGCGACCTAAATATTCTAGGTTTACTCAGCAGGAACTTCCAGCATGCAAGCCGATTCTTACGCCAAAATGGGTGATTTCAGCATTCATGCTTGTGACAATTGTCTTCATACCAATTGGACTTGCTTCCCTCTTTGCTTCTCGTGATGTAGTTGAAATTATTGACCGGTACGACAATGCCTGTATACAAGGCACAAAAAGTGAAAAGGTCCAATTTATACAGTCCAATGCAAATAAAACATGCACCAGAAGTTTGACGGTTAAAAAGCGGATGAAGCAGCCAATTTATGTCTATTATCAGCTGGACAATTTCTACCAGAATCATCGCAGGTATGTCAAGAGCCGAAGTGATTCACAATTGAGAAACCGTGGTGATGAGAATCAAACAAGTGACTGTAAGCCTGAACATGATGCCAATGGGATGGCGATTGTGCCTTGTGGTCTTGTCGCCTGGAGTCTGTTCAATGACACCTATAGCTTCTCCACTGGTAGCAACCAGCAATTGGCTGTAAACAAGAGACACATTTCATGGAAGAGTGACAGGGAGGACAAGTTTGGCAGCGATGTCTTCCCTAAAAATTTCCAGAATGGATCTCTTATTGGTGGTGGACGTCTCAATGAGTCTTTGCCATTAAGTGAGCAGGAAGACCTCATTGTGTGGATGCGAACTGCGGCCCTTCCAACTTTTAGGAAGTTGTATGGGAAGATAGAGGTGGATATCGAGGCAGGTGAGACGATAAACGTGAGATTGGAGAACAACTACAACACTTACAGCTTCAGCGGCAAGAAGAAACTTGTGCTTTCGACTACCAGCTGGCTTGGCGGAAAGAATAACTTTATTGGCATTGCATACCTTGCTGTTGGCGGCTTGTGCCTCTTACTAGCTACGACTTTCACCCTCATATATCTAGTTAAGCCAAGGCATCTTGGTGATCCGACTTATTTGTCATGGAACCGAAACCCAGGTGGTCATTGATGCGCGATTGTGCAATTATGAGGTGGGTCGAAGGGGCTCCTTGTGATCTTGTATGTATTTAATCTCTTCTAAGGCCATACTCTGTAGATCAGGTAGAACCGTTCCATTGGTTGTTTCGCAATTTTATTTGTTGATAAAGACTTTAAAGTAGACATCTGTATTATTGAGCACAGGGTGAAAGTTACGTTCACCCCTCTCGAATGTGCTATACCCTTCATGAAACATGTATTGATATTTTCAAGTATAGAATGAACGTTGCTGTTTTCCGTTTCTTGAATGTTTTGTTATGTCATGGAGTTTTACGTTGCAATTTCTAATATTTTTAGAGTTAATAGATTATTAGCTTGCAGAATGTGTAGAAAGAACATAACATTTACACTTTTCATAACTTCCATTGCATTTATTTCAAAGACATAGTAACAGAGTATATGTGTACTCAAAACCCCAAATCATATTTTTGAGATATGAATATATATTCTATCTCTATTTGCACTTTGTTACTTACAAAAAGCTGTCTCTAATCATGTAAAAGGAAACTCCCAATTAGAAGTAGAGGAAATGGCACCCATCATAACCTGGGTCAACGGTGACGAGCATGGCGGCACCGCCAAATTCACAGGTACCTCCGCCCACTTTTGTTCTTTGCCAGTAACTGTTGAATGCATAGGAAGCATGTGCAAACAATGTGTCTGGCTGATAGCAGTCTCTGTTTGGCTGCAGCGCTTCGCAGTCGGCCCCGGACCCACAAGCGTAGTTCATGGCTTCTTGGATGATCGGGTCTGGGACCGAAGGTTTCGCCACGCACCACAGTGCAGACTCCGGCTCGCTATGGGCAGGCGGGGGTCCTGTCGGAGGAGGGTACACGACTGGCGGTTCAAAGAGAGGCGGGGCGGGTATGAACCCTGTAGGAGACGGAAATGAGAATGTTGGTGGGCTTGGTTCAAAACTATAAGGCGGTCCCCCAACTGGGGTGGGTTCATAGGTGGCAGGCGAGCCTGGGGTGGTGGTAGTGGGCGGCGTGGAAGGAGTGGAGTAAGAGAAAGGCGGTGTAGGATAGGAAGAAGAGGATGATGCTGGCGGTGATGGGGTGTAAGATCCAGTGGAAGGTGGAGAAAACCCAGGCGATGTCGATGTCGGTGGCGGCAGGCTGGTGGTGGAAGGCGGTGAAAACCCGGATGATGTTGGTGGCGGTAGACTGGTGGTGGAAGGCGGAGAAAACCCAGATGACGTTGGTGGCGGCAGACTGGTGGTGGAAGGCGGAGAAAACCCAGATGATGACGGTGGCGGTAGGCTGGTGGTGGAAGGCGGAGAAGACCCAGGAGGATAGGAGCAATAAGCCTCAGGTAAAACAGGAGTAAGAGGATCAACAGGCGGCAACGGGAAATCATCCGCTAGATGATTAACAACATGATATCTCGACGATAATGTCAACGCTCCTGGTAATCTTGCATCTGATGATGCGGTGGAAGAAACGACAAATGCATAGAGAAACAACGACACCCAGTTCATCTTCATGGTCATTGATGTCATCTGCATATAGATACGGATATCATATATATATAGGTCGGAGAGTGATGGTGAGACGGAGTTCTTGCATGTGAGCACCGGTTTTCCGATACTTAGGAGATGGTTATGGAGATGGGTATGTAAGAGATTCTTGGCTTAAGAATGGATAAAAGCACCCTTAGAATGAGAAATGAAATGGAAAGGCTTTAATTTTGCTTGCTTTCTACTCAAAGCTATGAAACAGTATCCCAGTAGTAACACTAGTATATATCTGGCTAAAAGTCTACTACACCACCTCAAATAGTTTTGGAATCTATTTGGTTTGAAAGGTTTTTTTTTTTGT 3101 44.82 MNTSNPTTPMNANAPSSSSGGAGSPDSAPRRNSKRPKYSRFTQQELPACKPILTPKWVISAFMLVTIVFIPIGLASLFASRDVVEIIDRYDNACIQGTKSEKVQFIQSNANKTCTRSLTVKKRMKQPIYVYYQLDNFYQNHRRYVKSRSDSQLRNRGDENQTSDCKPEHDANGMAIVPCGLVAWSLFNDTYSFSTGSNQQLAVNKRHISWKSDREDKFGSDVFPKNFQNGSLIGGGRLNESLPLSEQEDLIVWMRTAALPTFRKLYGKIEVDIEAGETINVRLENNYNTYSFSGKKKLVLSTTSWLGGKNNFIGIAYLAVGGLCLLLATTFTLIYLVKPRHLGDPTYLSWNRNPGGH 357
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00116 357 PIRSF Lem3-Cdc50 8 353 IPR005045 GO:0016020(InterPro)
Cati3g00116 357 PANTHER CELL CYCLE CONTROL PROTEIN 50 29 349 IPR005045 GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0005886(PANTHER)|GO:0016020(InterPro)
Cati3g00116 357 MobiDBLite consensus disorder prediction 1 40 - -
Cati3g00116 357 MobiDBLite consensus disorder prediction 147 166 - -
Cati3g00116 357 MobiDBLite consensus disorder prediction 147 169 - -
Cati3g00116 357 MobiDBLite consensus disorder prediction 1 26 - -
Cati3g00116 357 Pfam LEM3 (ligand-effect modulator 3) family - CDC50 family 77 340 IPR005045 GO:0016020(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00116 K26935 cell cycle control protein 50
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:566385 Cati3g00116 Cati-Chr3:566385 dispersed
Cati Cati-Chr3:566385 Cati7g03564 Cati-Chr7:72739600 dispersed
Cati Cati-Chr3:566385 Cati3g00116 Cati-Chr3:566385 tandem