AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cind3g02001 | ATGATCAAGATTGACATCGCAAAAGTCAAGCTACTTGAAATAGCTAGATTGGAATTACCGGAGCATCATAGAGGCGATGCAGTGAGTTCAATGGTTTACGAGGCAAATGCTAGGATCAGGGATCCTGTGTATGGTTGTGTGGGCGCTATATCGTCCCTACAACAACAAATTGATGTACTTCAAGCACAACTAGCATTGTCACAAGCCGAAGTGGTTCACATGAGAATGCGCCAATACTCTACTAGTCCAGTCAACCATTCACCCGAGGATCACTCACCACCATCTCCACCAGACACCAACCATTTTTGGTATGAACATGGAGGTTAA | 327 | 44.65 | MIKIDIAKVKLLEIARLELPEHHRGDAVSSMVYEANARIRDPVYGCVGAISSLQQQIDVLQAQLALSQAEVVHMRMRQYSTSPVNHSPEDHSPPSPPDTNHFWYEHGG | 108 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cind3g02001 | 108 | Pfam | Lateral organ boundaries (LOB) domain | 18 | 68 | IPR004883 | - | |
| Cind3g02001 | 108 | MobiDBLite | consensus disorder prediction | 77 | 108 | - | - | |
| Cind3g02001 | 108 | Coils | Coil | 50 | 70 | - | - | |
| Cind3g02001 | 108 | ProSiteProfiles | LOB domain profile. | 1 | 71 | IPR004883 | - | |
| Cind3g02001 | 108 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 18 | 82 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cind3g02001 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cind | Cind-Chr3:308618784 | Cind6g00910 | Cind-Chr6:264694425 | dispersed | |
| Cind | Cind-Chr3:308618784 | Cind7g03054 | Cind-Chr7:37997215 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cind1g00127 | . | 35 | 246 | AS2 family | AT3G13850 | 46.281 | 1.12e-60 | 194.0 | |
| Cind1g01002 | ACH | 1 | 110 | AS2 family | AT5G67420 | 68.468 | 1.26e-53 | 169.0 | |
| Cind1g01570 | ACH | 27 | 327 | AS2 family | AT3G47870 | 39.61 | 1.15e-58 | 189.0 | |
| Cind1g02020 | . | 35 | 250 | AS2 family | AT3G03760 | 49.537 | 2.43e-54 | 174.0 | |
| Cind1g05134 | . | 3 | 114 | AS2 family | AT5G63090 | 81.25 | 2.15e-67 | 202.0 | |
| Cind1g05135 | . | 3 | 169 | AS2 family | AT5G63090 | 59.281 | 7.47e-64 | 193.0 | |
| Cind2g02733 | . | 1 | 124 | AS2 family | AT5G63090 | 87.903 | 4.15e-75 | 222.0 | |
| Cind2g03427 | . | 1 | 113 | AS2 family | AT3G26660 | 59.292 | 4.66e-49 | 152.0 | |
| Cind2g03429 | . | 1 | 116 | AS2 family | AT3G26660 | 56.034 | 1.59e-48 | 150.0 | |
| Cind3g01452 | . | 58 | 84 | AS2 family | AT1G31320 | 59.259 | 7.10e-06 | 39.7 | |
| Cind3g02001 | . | 60 | 125 | AS2 family | AT1G31320 | 84.848 | 1.07e-27 | 97.8 | |
| Cind3g02291 | ACH | 1 | 115 | AS2 family | AT5G67420 | 74.783 | 7.18e-64 | 194.0 | |
| Cind3g04633 | . | 40 | 244 | AS2 family | AT2G45420 | 59.903 | 5.01e-77 | 231.0 | |
| Cind3g04634 | ACH | 2 | 220 | AS2 family | AT4G00210 | 48.198 | 2.96e-61 | 188.0 | |
| Cind4g00367 | . | 2 | 250 | AS2 family | AT5G66870 | 49.645 | 1.97e-73 | 228.0 | |
| Cind4g00275 | . | 3 | 199 | AS2 family | AT1G65620 | 64.474 | 4.44e-80 | 236.0 | |
| Cind4g00782 | ACH | 1 | 89 | AS2 family | AT3G49940 | 66.292 | 2.89e-39 | 136.0 | |
| Cind4g03594 | . | 27 | 140 | AS2 family | AT3G47870 | 57.391 | 3.05e-42 | 144.0 | |
| Cind4g05399 | . | 7 | 123 | AS2 family | AT5G06080 | 65.812 | 9.64e-52 | 162.0 | |
| Cind4g05753 | . | 2 | 250 | AS2 family | AT5G66870 | 49.645 | 1.97e-73 | 228.0 | |
| Cind5g02654 | . | 51 | 253 | AS2 family | AT3G03760 | 59.113 | 3.16e-67 | 207.0 | |
| Cind5g05535 | . | 20 | 188 | AS2 family | AT4G00220 | 65.116 | 1.05e-67 | 207.0 | |
| Cind5g05662 | . | 20 | 188 | AS2 family | AT4G00220 | 65.116 | 1.05e-67 | 207.0 | |
| Cind6g00606 | . | 25 | 215 | AS2 family | AT3G58190 | 48.293 | 2.21e-54 | 171.0 | |
| Cind6g00607 | . | 40 | 245 | AS2 family | AT2G42430 | 48.058 | 9.43e-46 | 163.0 | |
| Cind6g00910 | . | 3 | 193 | AS2 family | AT2G30130 | 67.876 | 1.21e-85 | 248.0 | |
| Cind6g03636 | . | 8 | 245 | AS2 family | AT2G42430 | 54.622 | 5.75e-77 | 229.0 | |
| Cind6g03637 | . | 11 | 215 | AS2 family | AT3G58190 | 50.685 | 2.00e-66 | 202.0 | |
| Cind7g02089 | . | 11 | 105 | AS2 family | AT5G63090 | 26.667 | 1.23e-06 | 43.1 | |
| Cind7g02186 | . | 1 | 116 | AS2 family | AT3G49940 | 83.621 | 2.68e-72 | 217.0 | |
| Cind7g02717 | . | 3 | 258 | AS2 family | AT5G66870 | 50.192 | 7.40e-77 | 234.0 | |
| Cind7g05275 | . | 3 | 117 | AS2 family | AT2G30130 | 87.931 | 2.50e-71 | 213.0 | |
| Cind8g00059 | ACH | 1 | 116 | AS2 family | AT3G26660 | 56.034 | 1.59e-48 | 150.0 | |
| Cind8g01143 | . | 36 | 129 | AS2 family | AT3G13850 | 53.684 | 4.08e-29 | 109.0 | |
| Cind8g01146 | . | 30 | 140 | AS2 family | AT3G47870 | 43.363 | 4.15e-26 | 107.0 | |
| Cind8g01149 | . | 36 | 155 | AS2 family | AT3G13850 | 49.587 | 3.24e-32 | 113.0 | |
| Cind8g01418 | . | 35 | 141 | AS2 family | AT3G13850 | 70.093 | 1.04e-51 | 167.0 | |
| Cind8g02361 | ACH | 38 | 145 | AS2 family | AT3G49940 | 65.741 | 1.27e-44 | 146.0 | |
| Cind8g03504 | . | 1 | 240 | AS2 family | AT2G42440 | 50.41 | 7.66e-67 | 204.0 | |
| Cind9g04195 | . | 37 | 144 | AS2 family | AT3G27650 | 82.407 | 2.95e-66 | 197.0 | |
| Cind9g04427 | . | 1 | 288 | AS2 family | AT5G66870 | 52.769 | 1.57e-82 | 249.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Cind | LOB | 6.3e-15 | No_clan | TF | LOB |