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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind9g03637 ATGGAGTCAACAACGATAGAAGATTCGGAAATAGAATACGTGAGCTACAACGGAGAGCATCATTTACCATTAATAATGCAACTCGTTGATCAAGAATTAAGCGAACCTTATTCCATTTTCACTTATCGTTATTTTGTCTATCTCTGGCCTAACTTATCATTCCTTGCGTTTCATAAGGGGAAATGTATCGGGACGGTTGTTTCGAAGATGGGGGAGCATCGAAATACTTATAGAGGATATATTGCTATGCTCGTTGTTCTTAAACCCTATCGCCATAAAGGCATTGCTACGGAACTTGTTACTAGGTCTATTAAAGTGATGATGGAATCAGGTTGCGAAGAGGTCACATTGGAAGCAGAAGTTACAAATAAAGGAGCGCTTGCACTATATGGCCGGCTTGGTTTTATAAGAGCAAAAAGGCTATTTAGATACTACTTGAACGGCGTTGATGCATTTAGATTGAAGCTGCTATTTCCCCATCCAGAATTACCATCTTCACACCCTCATTCGTATTCCCACAATCTAATGTCATCAGTCCCTGAGATCGATGAAGATTAA 558 39.78 MESTTIEDSEIEYVSYNGEHHLPLIMQLVDQELSEPYSIFTYRYFVYLWPNLSFLAFHKGKCIGTVVSKMGEHRNTYRGYIAMLVVLKPYRHKGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYLNGVDAFRLKLLFPHPELPSSHPHSYSHNLMSSVPEIDED 185
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind9g03637 185 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 11 159 IPR000182 GO:0016747(InterPro)
Cind9g03637 185 PANTHER N-ALPHA-ACETYLTRANSFERASE 30 6 162 IPR044542 GO:0004596(PANTHER)|GO:0004596(InterPro)|GO:0017196(InterPro)|GO:0017196(PANTHER)|GO:0031417(PANTHER)
Cind9g03637 185 CDD NAT-SF 53 118 - -
Cind9g03637 185 MobiDBLite consensus disorder prediction 164 185 - -
Cind9g03637 185 FunFam N-alpha-acetyltransferase MAK3 isoform A 18 170 - -
Cind9g03637 185 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 19 160 IPR016181 -
Cind9g03637 185 Gene3D - 18 174 - -
Cind9g03637 185 Pfam Acetyltransferase (GNAT) family 25 135 IPR000182 GO:0016747(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind9g03637 K00670 N-alpha-acetyltransferase 30 [EC:2.3.1.256]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr1:400844082 Cind9g03637 Cind-Chr9:154287167 dispersed
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cind Acetyltransf_1 5.3e-20 CL0257 TR GNAT