AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi6g01001 ATGGCGACTCCTGATGTTTTTGTGCAGGCCGAACACGATCGTTTCTTTGATCATACCAAAGGCGATGCTAAATCAAGAGGATTGGCGCTCGAGAAAAAAATTGAATACCTAGAGAGCTTGAATGACAGGGTTAGCAACAGACGTGCACGCAGATGGATAAATGATCGTATATTGTTGGAACTTGTGCCTCGTTTGACTGGAGATGAAATTAGAGGGTTGTTTGCTCCACCGCCTTTTGGTGATGAGGCACAACCGTCAGCGTTTAGCATGACAAATGTGGGAGAGTGGGACAAATTTAGGAATATAGACATGGATAAAGAGGCTGGTGCAATAGAGTCACTTAAAGGGTTGCCATCAAAGAAGAAAAGCAATGTGGATGCTGATAAGATTGCTGCTTTGACCGCATGGCATAGGGTTGACTGCAGAACTCGAGAGGCTTTTCGCCGGAGTTTTCTTCCGGAACTCGTTAATGGTTTTGAGGTGAACATACGTGCCTTTGTGGCAGAGGCAGCCAATGAGGAGGTTCTTGTGATGAATGCTCAGGATCCGTTTCATAGGTTGTTACTTCATGGAGTTTGTGAGTTCTATAATTTGGTGTCGACAACGGAGTCGGAGACAAAAGGTACAAAGGTGTTGAAGATGACCAAAATCAAGAAGAAGAAAGCGGGTAAAAATGAGCTCCCAAGTATCACGCTTTGTGAGTTTCTGAAAATGGCAAAAGATGGTTTCTGCTAA 735 44.22 MATPDVFVQAEHDRFFDHTKGDAKSRGLALEKKIEYLESLNDRVSNRRARRWINDRILLELVPRLTGDEIRGLFAPPPFGDEAQPSAFSMTNVGEWDKFRNIDMDKEAGAIESLKGLPSKKKSNVDADKIAALTAWHRVDCRTREAFRRSFLPELVNGFEVNIRAFVAEAANEEVLVMNAQDPFHRLLLHGVCEFYNLVSTTESETKGTKVLKMTKIKKKKAGKNELPSITLCEFLKMAKDGFC 244
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi6g01001 244 CDD R3H 163 210 - -
Cobi6g01001 244 Gene3D - 150 241 IPR036867 GO:0003676(InterPro)
Cobi6g01001 244 PANTHER R3H DOMAIN-CONTAINING PROTEIN 4 20 242 IPR039629 -
Cobi6g01001 244 SUPERFAMILY R3H domain 136 215 IPR036867 GO:0003676(InterPro)
Cobi6g01001 244 Pfam R3H-associated N-terminal domain 30 149 IPR025952 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi6g01001 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
377597 Cobi2g02327 Cobi6g01001
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr2:71055677 Cobi6g01001 Cobi-Chr6:8047693 wgd