AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ecan3g00053 | ATGTCAGTGCTTCATTTGCCTCCCATCCAAGTATGTTGTTTAACAAATAAGAAGCATAAAGATTCTTCAATTAATAATAATAAATCATCAAAGTTTGCACAATCAAATTCAAGAAACACAACTTACAGAAAAGATTCTTTTCACCAAGAACGAAAACCGCATAATGTGAACCTGGAAATTTCACCTCATCGAGCTGTATCTGCTGTGAGATTAATGCGGATAGAGTTTGGTGGTGCATTTGCCGACCTTTTAAATGAGAAAGGGAAAGGATCAGGTGACAACGAGATGGGATATGTTGAAAGAACTCTTGGATTTTGCACGCGAGATTTGGATGATAGAGATCTCAGAATGGTAACAGATATTGTTGGAGGTACAATGCGTTGGAGAAAATATCTTGACTATTTGATTTTGTCTTTGTGCCATGACCCAAACGTGTTTAGTCGTATGGAACCACTACTGTTACAGATTCTTCGGATTGGATTTTATGAAATCGTAAAGCTTGAGGTACCTTCATATGCCGTTGTTGATGAGAATGTGCAGCTGGCAAAAATTGCCCTTAGGCCCGGTGCTGGTAACATGGTCAATGGGATTCTGAGGAAGCTCGTTTTGCTTAAGGAAAGTAACTCTCTTCCTTCACCTCAACTTGAGGGTGATGATCGTGCGCAAGCACGTGCTCTTGCTACTCTCCATTCCCATCCAGTTTGGATGGTGAGACGTTGGATAAAATACCTCGGGCGTGAAGAAGCTATCAAGCTGATGATGTGGAATAACAGTGATCCCAGTTTTAGTCTGAGGGCTAATAGGGGGAAAGGTTTTACACGATCTGAGCTTGTGTCTCGACTTGAAACATTAAAGGTACCCTATGAGCTCTCTCCTCACCTGAACGATTTTGTTCGTATCAGCACGGGAATGCAGAGTGTTATACAAGCTGGACTACTAAAAGAAGGCTTATGTTCTGTCCAAGACGAGAGTGCAGGTTTGGTGGTTTCCATTGTTGATCCACAACCTGGAGAGACCATTATTGACTGTTGTGCTGCTCCTGGAGGGAAGACCCTCTTCATGGCAGCATGTTTGAATGGCCAAGGCATGGTAACTGCAATTGACATAAATAAAGGGCGCTTAAGGATCCTCAAAGAAACGGCCAAAATGCAGAAACTTAATAATGTCATCACTACAGTTCATGCCGATCTTCGTGAATTTCCAGAGAAGAATCAGGTGGTTTATGATAAAGTGTTGCTGGATGCTCCTTGTTCTGGACTTGGTGTTCTTTCCAAGAGAGCAGACTTGCGCTGGAATAGGAAGTCGGAAGATATGGAAGAACTTAAAAGTTTGCAAGATGAACTTCTTGATGCAGCTTCCATGTTGGTAAAACCTGGTGGGGTGCTAGTATACAGCACTTGTTCTATTGATCCCGAAGAAAATGAAGAGAGGGTGGCTGCATTTCTTGTCAAGCATCAGGAATACAGCATAGATTCTGCAGAGAGATATACCGCGCCTGAATTTTTGACAGAACAAGGTTACTATTTTTCTAGCCCTGTGAAAAATTCTCTTGATGGTGCCTTTGCAGCTCGTCTCATTCGGTGCGCTTAA | 1590 | 42.33 | MSVLHLPPIQVCCLTNKKHKDSSINNNKSSKFAQSNSRNTTYRKDSFHQERKPHNVNLEISPHRAVSAVRLMRIEFGGAFADLLNEKGKGSGDNEMGYVERTLGFCTRDLDDRDLRMVTDIVGGTMRWRKYLDYLILSLCHDPNVFSRMEPLLLQILRIGFYEIVKLEVPSYAVVDENVQLAKIALRPGAGNMVNGILRKLVLLKESNSLPSPQLEGDDRAQARALATLHSHPVWMVRRWIKYLGREEAIKLMMWNNSDPSFSLRANRGKGFTRSELVSRLETLKVPYELSPHLNDFVRISTGMQSVIQAGLLKEGLCSVQDESAGLVVSIVDPQPGETIIDCCAAPGGKTLFMAACLNGQGMVTAIDINKGRLRILKETAKMQKLNNVITTVHADLREFPEKNQVVYDKVLLDAPCSGLGVLSKRADLRWNRKSEDMEELKSLQDELLDAASMLVKPGGVLVYSTCSIDPEENEERVAAFLVKHQEYSIDSAERYTAPEFLTEQGYYFSSPVKNSLDGAFAARLIRCA | 529 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ecan3g00053 | 529 | Gene3D | - | 66 | 223 | IPR035926 | - | |
| Ecan3g00053 | 529 | Pfam | 16S rRNA methyltransferase RsmB-F | 331 | 525 | IPR049560 | - | |
| Ecan3g00053 | 529 | FunFam | Ribosomal RNA small subunit methyltransferase B | 324 | 528 | - | - | |
| Ecan3g00053 | 529 | Pfam | NusB family | 99 | 201 | IPR006027 | GO:0003723(InterPro)|GO:0006355(InterPro) | |
| Ecan3g00053 | 529 | NCBIfam | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 108 | 527 | IPR004573 | GO:0006364(InterPro)|GO:0008649(InterPro) | |
| Ecan3g00053 | 529 | FunFam | Ribosomal RNA small subunit methyltransferase B | 61 | 211 | - | - | |
| Ecan3g00053 | 529 | FunFam | 16S rRNA (Cytosine(967)-C(5))-methyltransferase RsmB | 219 | 323 | - | - | |
| Ecan3g00053 | 529 | CDD | AdoMet-MTases | 339 | 465 | - | - | |
| Ecan3g00053 | 529 | PRINTS | RNA (C5-cytosine) methyltransferase signature | 459 | 475 | IPR023267 | GO:0001510(InterPro)|GO:0008173(InterPro) | |
| Ecan3g00053 | 529 | PRINTS | RNA (C5-cytosine) methyltransferase signature | 510 | 527 | IPR023267 | GO:0001510(InterPro)|GO:0008173(InterPro) | |
| Ecan3g00053 | 529 | PRINTS | RNA (C5-cytosine) methyltransferase signature | 409 | 421 | IPR023267 | GO:0001510(InterPro)|GO:0008173(InterPro) | |
| Ecan3g00053 | 529 | PRINTS | RNA (C5-cytosine) methyltransferase signature | 312 | 326 | IPR023267 | GO:0001510(InterPro)|GO:0008173(InterPro) | |
| Ecan3g00053 | 529 | PRINTS | RNA (C5-cytosine) methyltransferase signature | 341 | 351 | IPR023267 | GO:0001510(InterPro)|GO:0008173(InterPro) | |
| Ecan3g00053 | 529 | PANTHER | NOP2 YEAST -RELATED NOL1-NOP2-FMU SUN DOMAIN-CONTAINING | 112 | 526 | IPR023267 | GO:0001510(InterPro)|GO:0008173(InterPro) | |
| Ecan3g00053 | 529 | Gene3D | Sun protein; domain 3 | 224 | 325 | - | - | |
| Ecan3g00053 | 529 | ProSiteProfiles | SAM-dependent MTase RsmB-NOP-type domain profile. | 252 | 528 | IPR001678 | GO:0008168(InterPro) | |
| Ecan3g00053 | 529 | SUPERFAMILY | NusB-like | 99 | 236 | IPR035926 | - | |
| Ecan3g00053 | 529 | MobiDBLite | consensus disorder prediction | 19 | 42 | - | - | |
| Ecan3g00053 | 529 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 224 | 527 | IPR029063 | - | |
| Ecan3g00053 | 529 | PRINTS | Viridiplantae FMU-related RCMT signature | 93 | 109 | IPR023268 | - | |
| Ecan3g00053 | 529 | PRINTS | Viridiplantae FMU-related RCMT signature | 69 | 92 | IPR023268 | - | |
| Ecan3g00053 | 529 | PRINTS | Viridiplantae FMU-related RCMT signature | 486 | 498 | IPR023268 | - | |
| Ecan3g00053 | 529 | PRINTS | Viridiplantae FMU-related RCMT signature | 209 | 222 | IPR023268 | - | |
| Ecan3g00053 | 529 | Pfam | Methyltr-RsmF-B-like, ferredoxin-like domain | 232 | 303 | IPR054728 | - | |
| Ecan3g00053 | 529 | Gene3D | Vaccinia Virus protein VP39 | 326 | 529 | IPR029063 | - | |
| Ecan3g00053 | 529 | MobiDBLite | consensus disorder prediction | 19 | 52 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ecan3g00053 | K03500 | 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Ecan | Ecan-Chr3:419834 | Ecan3g00055 | Ecan-Chr3:419834 | dispersed | |
| Ecan | Ecan-Chr3:419834 | Ecan3g00053 | Ecan-Chr3:419834 | tandem | |
| Ecan | Ecan-Chr3:419834 | Ecan3g00054 | Ecan-Chr3:419834 | tandem |