AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g00087 ATGTTATGTTGCACGCAGACTTTCGACATGTCAACAAGATTTGTGGTTCGTCAAAAGCCAGAAAATCCACTGTTGTTACTTGGACAATATAGTGATGAGGAGGTGGAGGAAGAGTTTGGTAAAGAAATAAGCCATGAGACTCGTGCAGACTCTCCTGCTAATCTTGATGAGCAGGTAAAGGTAGACAAACATGAGGGTGCTGGAGTTTTAGAGGATGAAAACCTGACAGTTGACAAAGTCTATAAAGAAAACAAGAACTCTTCACTGGATGTCTTGCCAAAGGTAGAGGAAATTGGTATTATAGAGGATAATACAGCAGAGTCTCTGCAGAGAGATATGGATGTAGCTGAGCAGGCATCTGAGGTTCCTATGACGGGAGATGTGGGCTCAGATTGGAAAATGGTGTTACATGAGGAGAGCAATTCACAATATTATTGGAACGTTGTGACTGGTGAAACTTCGTGGGAAGTTCCTGCTGTTTTGACCCCCGGATATGAAGCAGCCTATCATCTTAAATCTGGTCAAGAAGTTGAAGAAACCCATGTAACATCTGTTGATACACAACCAAATAATGGATCTACAAATAGTATGGTCATTGAGACCACAGAGATCACTGCTTCTAGATCTCAATCTGAAGTGCATGATGAAAAGTATGCTAGTATTATGGCAAACGATAGAGACTTGGTTAACCATGCTAATATACTTGATGCCGGTAAGATGTCGAGTTCAAATGGTTTTTATTATGGTTCATCTGATGGGGTTTTTGAAGACCATTTTAGTGATGGTTTGAGTAATACGGGAGTCCACCGTACCAATTCCAATATTCAAGATATGAGTAGTCACTTGTATCAGGAAACAGTTGATCAGTCTTCAGATTCTTTCCGTCTTATGCAACTTGGTGAAAATCTATCAGAAAGATTAAAATCCTTTCAAGGGTGCAATGACCAGATATCAAAGTTGTTGTTTGAGCTTGATATAAGACTTGCAGACATTAAATCACTAGTACCTTACGGATCATCATTGCTTCCTTTTTGGCTGCATTCTGAAAATCAGCTGAAAAAGCTAGAAGCTGCTGTCAACAATGAAGCTCTAAAATTCTCTCAATTTGCAAATATTGGTGAAACGAACAAGACAGAAAACAAATTACAGGAGAACAACATTTGTGGAGTGAGCACAAATAATGCTGCTTGCTTGGAGTTTGACGCTTCTGATCTTGCTCCTGGTGCTCCCACAGAGGATTACACTCCTAAATTTGTTGATGGCACTGCCCATGAAATTGCAAGTCCAGCAGATATCATCCCAAACACAGCCCCCCATTGTGTGGAAGATGTAGACATGGATGTGGACATGGATGTGGAAGAGGGAGAAATTCCTGCTGGCGATGATGCAGCAGTCCAAGACTGGTCCCAATCCGATCAATCTGTTGCACCAATCACAGAAAGACAACATGAGTCTCGTGGATCTGCAGAACCCGAAATTCCACCTTTGCCTGATGATGTGTGGGTTCCTCCACCACCACCAGATGAAGAACCTATACCTCCACCACCTCCGGATGAGCCTCTAGAATCCCAGCTCCCACCACTGACGTCAGAGATTCAGGCAGCACAGCATTACACTTATGGAGAACAATATAGTTTTTCATACCCAGGGTCTAACGTTGAATATTATGGCCAAACAAACACACAAAATGCTAGCAATCAATATTATGTAGATGCTAATGGATGTCAAGTTGCTGCTCCTCTTCCAGCCGTTTATTATACGTCAGTGCCGAACCTGTATTCAGATGCCACTTCAATGATGAATGATGGAAAGCCCGCGGCGTATTACACCCTACAAGATGGGTCAGTATCAACTGCATCAGTCATTGGCAGTGTAGAAACTTCTGATCAAACCAAATCATCTACAGCACTTCCTTCCATTTCAGCCCCTGCTTATGCTCCATCAACTTCTATTGTAACATCTGCTCCTGCTGTTGCTTCGACAGTTGCTCCAACTGAACCGGTTTCTAAAGCTCAACCTAAAGTTCCACGTATAAAAAAAAGACCTGTCACAGCGGGGACCTCTTTAAGGTCTAACAAGAAAGTTTCTGGCTTGGTGGATAAGTGGAAGGCGGTGAAAGAGGAATTACATGAAGATGAAGAAGATGAACCTGAAAATGCGTATGAGGTTTTAGAGAAGAAGCGACAACGAGAGATTGAGCAATGGATTGCTCAACAGATTGCAACCGGTGAAGCCAAAGACAATGCCAACTTTCAGCCACTGGGTGGTGATTGGCGAGAGAGGGTTAGGTGGAAGAGAACGAAAAAATTAAAGCAAGTCGAAGAGAATACCGCAAAGGACAATGATGACACGAATCAACAGCCTGATCTTGTTGAACTTTCAAAACAACTTCCATATGGATGGCAGGCATATTGGGATGAAACATCGAAGCAGATTTATTATGGTAACTCAAAGACATCAGAGACCACATGGACTAAACCTACCAGTTAA 2490 42.33 MLCCTQTFDMSTRFVVRQKPENPLLLLGQYSDEEVEEEFGKEISHETRADSPANLDEQVKVDKHEGAGVLEDENLTVDKVYKENKNSSLDVLPKVEEIGIIEDNTAESLQRDMDVAEQASEVPMTGDVGSDWKMVLHEESNSQYYWNVVTGETSWEVPAVLTPGYEAAYHLKSGQEVEETHVTSVDTQPNNGSTNSMVIETTEITASRSQSEVHDEKYASIMANDRDLVNHANILDAGKMSSSNGFYYGSSDGVFEDHFSDGLSNTGVHRTNSNIQDMSSHLYQETVDQSSDSFRLMQLGENLSERLKSFQGCNDQISKLLFELDIRLADIKSLVPYGSSLLPFWLHSENQLKKLEAAVNNEALKFSQFANIGETNKTENKLQENNICGVSTNNAACLEFDASDLAPGAPTEDYTPKFVDGTAHEIASPADIIPNTAPHCVEDVDMDVDMDVEEGEIPAGDDAAVQDWSQSDQSVAPITERQHESRGSAEPEIPPLPDDVWVPPPPPDEEPIPPPPPDEPLESQLPPLTSEIQAAQHYTYGEQYSFSYPGSNVEYYGQTNTQNASNQYYVDANGCQVAAPLPAVYYTSVPNLYSDATSMMNDGKPAAYYTLQDGSVSTASVIGSVETSDQTKSSTALPSISAPAYAPSTSIVTSAPAVASTVAPTEPVSKAQPKVPRIKKRPVTAGTSLRSNKKVSGLVDKWKAVKEELHEDEEDEPENAYEVLEKKRQREIEQWIAQQIATGEAKDNANFQPLGGDWRERVRWKRTKKLKQVEENTAKDNDDTNQQPDLVELSKQLPYGWQAYWDETSKQIYYGNSKTSETTWTKPTS 829
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g00087 829 ProSitePatterns WW-rsp5-WWP domain signature. 132 158 IPR001202 GO:0005515(InterPro)
Ecan3g00087 829 Gene3D - 793 829 - -
Ecan3g00087 829 SMART ww-5 796 829 IPR001202 GO:0005515(InterPro)
Ecan3g00087 829 SMART ww-5 127 160 IPR001202 GO:0005515(InterPro)
Ecan3g00087 829 PANTHER OS06G0298400 PROTEIN 18 828 - -
Ecan3g00087 829 MobiDBLite consensus disorder prediction 496 523 - -
Ecan3g00087 829 CDD WW 798 828 IPR001202 GO:0005515(InterPro)
Ecan3g00087 829 MobiDBLite consensus disorder prediction 466 481 - -
Ecan3g00087 829 ProSiteProfiles WW-rsp5-WWP domain profile. 795 829 IPR001202 GO:0005515(InterPro)
Ecan3g00087 829 Gene3D - 113 181 - -
Ecan3g00087 829 ProSiteProfiles WW-rsp5-WWP domain profile. 126 160 IPR001202 GO:0005515(InterPro)
Ecan3g00087 829 SUPERFAMILY WW domain 793 828 IPR036020 GO:0005515(InterPro)
Ecan3g00087 829 ProSitePatterns WW-rsp5-WWP domain signature. 801 827 IPR001202 GO:0005515(InterPro)
Ecan3g00087 829 MobiDBLite consensus disorder prediction 459 525 - -
Ecan3g00087 829 MobiDBLite consensus disorder prediction 772 786 - -
Ecan3g00087 829 MobiDBLite consensus disorder prediction 772 791 - -
Ecan3g00087 829 SUPERFAMILY WW domain 120 160 IPR036020 GO:0005515(InterPro)
Ecan3g00087 829 Pfam WW domain 130 158 IPR001202 GO:0005515(InterPro)
Ecan3g00087 829 Pfam WW domain 797 827 IPR001202 GO:0005515(InterPro)
Ecan3g00087 829 MobiDBLite consensus disorder prediction 661 685 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g00087 K24774 formin-binding protein 4
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:621129 Ecan3g00087 Ecan-Chr3:621129 dispersed
Ecan Ecan-Chr3:621129 Ecan3g00087 Ecan-Chr3:621129 tandem