AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g00116 ATGAGCTGGTGGCGATCAGGGTTCGTCGGGGCTGCAAGGAAAAAACTCGAGGACAGCAATCCATTACGCAAGTACCAAAGATTTGCATTAATAGTCGGGGTAACTGGTATTGTTGGCAATAGCCTTGCTGAAATATTACCGCTCCATGACACCCCAGGTGGTCCTTGGAAGGTCTATGGAGTCGCCCGTCGCCCTAGACCACCATGGAATTCTGATTACCCAATGGAATATATCCAATGTGATATAACAAATCCAGAAGAAACAGAATCAAAACTCTCGAATTTACCAGACTTGACCCATGTATTCTATGTTACATGGGCCAACTGCTCAACTGAAGAAGAAAATTGCCAAGTAAATGGGCAAATGCTCAGAAATGTCCTGAATGCGGTAATGCCTAACTCCCCTAATTTACAGCATGTATCCTTACAAACGGGGCGTAGGCATTATGTCGGGCCATTTGAACAATGTGGTACTAATGAGTTTCATGATGGTCCTTTTTATGAAGATCTTCCTAGGCTTAAAAATCTAAATTTCTATTACACACTTGAAGATATATTGTTTAGTGAGGTTACCAAAAAAGAAGGATTAACATGGTCTGTTCATAGACCAGGGTTGATTTTTGGGTTTTCACCAAACAGTATGATGAATATTTTAGGAAGCTTATGTGTTTATGCATCGATATGTAAGCATGAAGGTGAACCGCTAAAGTTTCCAGGCACAAAAGAAGCATGGAATAGCTATAGTGATGCTTCTGATGCTGACCTGGTTGCCGAGCACCATATATGGGCGGCTGTGGATCCTATTGCTAAAAATGAAGCTTTTAACATTAGTAATGGCGACGTGTTCAAATGGAAGGATATTTGGAAAGTGTTGGCTGAGCAATTTGATGTAGAAAATGGAGGGCTTCAAGAAGACGAAGAGAGGAAGAGCTTGAACGAGCTGATGAAAGATAAAGGGCCAGTTTGGGATGCTATTGTAACGGAGAATGAGCTTTTACCGACTAAGTTAGAGCAAGTCGGAGGATGGTGGTTTGTGGATCTTATTCTTAGCAATGAGGGCATGTTGGATATTATGAATAAGAGCAAAGAACATGGTTTTTTAGGGTTTCGAAACTCGATATCATCTTTGGTTTCTTGGATTGATAAGATAAAATGTTGCAAGATTGTTCCATAG 1173 40.92 MSWWRSGFVGAARKKLEDSNPLRKYQRFALIVGVTGIVGNSLAEILPLHDTPGGPWKVYGVARRPRPPWNSDYPMEYIQCDITNPEETESKLSNLPDLTHVFYVTWANCSTEEENCQVNGQMLRNVLNAVMPNSPNLQHVSLQTGRRHYVGPFEQCGTNEFHDGPFYEDLPRLKNLNFYYTLEDILFSEVTKKEGLTWSVHRPGLIFGFSPNSMMNILGSLCVYASICKHEGEPLKFPGTKEAWNSYSDASDADLVAEHHIWAAVDPIAKNEAFNISNGDVFKWKDIWKVLAEQFDVENGGLQEDEERKSLNELMKDKGPVWDAIVTENELLPTKLEQVGGWWFVDLILSNEGMLDIMNKSKEHGFLGFRNSISSLVSWIDKIKCCKIVP 390
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g00116 390 Gene3D - 27 390 - -
Ecan3g00116 390 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 298 IPR036291 -
Ecan3g00116 390 PANTHER 3-OXO-DELTA(4,5)-STEROID 5-BETA-REDUCTASE 23 390 - -
Ecan3g00116 390 CDD 5beta-POR-like-SDR-a 29 326 - -
Ecan3g00116 390 Pfam PRISE-like Rossmann-fold domain 87 328 - -
Ecan3g00116 390 FunFam Iridoid synthase 25 390 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g00116 K22419 Delta4-3-oxosteroid 5beta-reductase [EC:1.3.1.3]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr1:30878301 Ecan3g00116 Ecan-Chr3:906072 dispersed
Ecan Ecan-Chr3:906072 Ecan4g02423 Ecan-Chr4:34388923 dispersed