AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan8g02701 ATGGAGAGAAACGAGGCGTGTGGCTTGTCACCATTTGCCGGCCGGTTTGATTTGGGAATAGGAATGGGAATGGGTATGGATATGGATATGGATATGGGTATGGGTATGAATCTCGTTGGTGTTCAGGAACAACAAGCTGCTGACATTAAACCAAACATTGATGACAAACATATTAATGTTAATAATAATAATAAAAATAATAATAATAATAAGAATGTTCAAGATGATGACGAAAGGGATCTGGTTGCGGCTGCTCGGTTCGATTTTCTTAAGAAAAAAAGGATGCCCAGATTCCGACGAGGTGCATCCGCCGCCGCTGTTCGGTCTTTTCCGCATTTAACTTCCTTTGCTACCCCGATTCCGACAAGTATTGTCGATCAGGGAAGGCTCACATTTCTCTTTAGCAAGAAGCTGCAGAAAAGTGACGTTGGCGTACTCAAAAGAATTGTGCTGCCAAAGAAACCAGCAGAAACACACCTACCTGCACTGATCGCTAAGGAAGGTATCATTTTGGAGATGGATGACATGGTTGGCATGCATGTGTGGTGTTTCAAGTTTAGGTTTTGGCCAAACAACAACAGTCGCATGTATGTCCTTGAGGGCACTGGGGAATTTGCCGAGGAACACGAGTTGCAACTGGGTGATTATATAATGTTGTATCGAGATTCGGTTAACCTCAACTATGTAATACATGCCGTAAAAGCTTATGAAGTGGAGGAGTTCACAAAAAAAGAAGTGAAAACTAGTGTCCGTACTCAGGGGAAATCTGGCAAAACACCACCAAATAACTGTGGTTTGATGAATCAGAGTTGGCCCTGGGGTGGCCTTGAAGTTGAGCTACTTAATCCTACTAACTACCCTATGAACGTTTCGCCCGTAGAGGATCAGATGGACATGACCTTCGTTTATGACACCAGCTATTCCAATGACACTATGACTCCACTTGATTTCTTGGATGGATTCATGACAAGCTACCCAACTTCTCAGCCTAATTTTGCCATTGATAATTTGTCTATTGATGATCTCTATAAGATCTAG 1038 42.58 MERNEACGLSPFAGRFDLGIGMGMGMDMDMDMGMGMNLVGVQEQQAADIKPNIDDKHINVNNNNKNNNNNKNVQDDDERDLVAAARFDFLKKKRMPRFRRGASAAAVRSFPHLTSFATPIPTSIVDQGRLTFLFSKKLQKSDVGVLKRIVLPKKPAETHLPALIAKEGIILEMDDMVGMHVWCFKFRFWPNNNSRMYVLEGTGEFAEEHELQLGDYIMLYRDSVNLNYVIHAVKAYEVEEFTKKEVKTSVRTQGKSGKTPPNNCGLMNQSWPWGGLEVELLNPTNYPMNVSPVEDQMDMTFVYDTSYSNDTMTPLDFLDGFMTSYPTSQPNFAIDNLSIDDLYKI 345
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan8g02701 345 SMART B3-2 134 236 IPR003340 GO:0003677(InterPro)
Ecan8g02701 345 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 50 231 IPR044800 GO:0003700(InterPro)
Ecan8g02701 345 SUPERFAMILY DNA-binding pseudobarrel domain 132 231 IPR015300 -
Ecan8g02701 345 Gene3D - 130 249 IPR015300 -
Ecan8g02701 345 Pfam B3 DNA binding domain 134 231 IPR003340 GO:0003677(InterPro)
Ecan8g02701 345 CDD B3-DNA 132 231 IPR003340 GO:0003677(InterPro)
Ecan8g02701 345 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan8g02701 K09287 RAV-like factor
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr7:33068464 Ecan8g02701 Ecan-Chr8:37905901 dispersed
Ecan Ecan-Chr8:37905901 Ecan9g00556 Ecan-Chr9:4670930 dispersed
Ecan Ecan-Chr8:37905901 Ecan7g02077 Ecan-Chr7:31319023 transposed
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ecan8g04012 ACH 44 293 B3 DNA Binding Superfamily AT1G01030 47.508 1.04e-66 218.0
Ecan8g04011 . 44 293 B3 DNA Binding Superfamily AT1G01030 47.508 1.35e-67 218.0
Ecan8g02408 ACH 264 396 B3 DNA Binding Superfamily AT2G30470 43.284 6.35e-33 125.0
Ecan8g02409 ACH 264 396 B3 DNA Binding Superfamily AT2G30470 43.284 3.41e-33 125.0
Ecan8g00277 ACH 112 230 B3 DNA Binding Superfamily AT3G19184 45.082 8.16e-27 107.0
Ecan8g02701 . 45 313 B3 DNA Binding Superfamily AT3G26790 41.544 4.44e-55 181.0
Ecan8g02286 . 40 846 B3 DNA Binding Superfamily AT5G62000 60.917 0.0 978.0
Ecan9g00556 ACH 3 714 B3 DNA Binding Superfamily AT4G32010 41.255 0.0 545.0
Ecan9g01352 . 243 477 B3 DNA Binding Superfamily AT4G32010 37.037 7.88e-35 138.0
Ecan1g01793 . 1 669 B3 DNA Binding Superfamily AT4G30080 55.523 0.0 678.0
Ecan2g01417 . 1 593 B3 DNA Binding Superfamily AT4G30080 54.59 0.0 577.0
Ecan2g01416 . 1 593 B3 DNA Binding Superfamily AT4G30080 54.59 0.0 577.0
Ecan2g00343 . 157 289 B3 DNA Binding Superfamily AT1G05930 31.387 2.64e-09 55.5
Ecan2g03450 . 16 124 B3 DNA Binding Superfamily AT3G18960 30.0 8.27e-13 66.2
Ecan2g02422 . 115 236 B3 DNA Binding Superfamily AT3G19184 43.443 9.87e-35 129.0
Ecan2g02421 . 115 236 B3 DNA Binding Superfamily AT3G19184 43.443 9.87e-35 129.0
Ecan2g02423 . 115 236 B3 DNA Binding Superfamily AT3G19184 43.443 9.55e-35 129.0
Ecan2g00258 . 33 462 B3 DNA Binding Superfamily AT1G19850 73.441 0.0 661.0
Ecan2g03759 . 573 659 B3 DNA Binding Superfamily AT4G30080 35.632 6.25e-12 59.7
Ecan2g02419 ACH 100 221 B3 DNA Binding Superfamily AT3G19184 45.902 1.39e-33 126.0
Ecan2g02420 . 100 251 B3 DNA Binding Superfamily AT3G19184 41.176 8.44e-34 125.0
Ecan2g02371 . 9 129 B3 DNA Binding Superfamily AT5G66980 37.398 5.50e-22 90.9
Ecan3g03780 . 1 797 B3 DNA Binding Superfamily AT5G37020 57.937 0.0 862.0
Ecan3g01447 . 4 665 B3 DNA Binding Superfamily AT1G59750 65.929 0.0 878.0
Ecan3g03892 . 1 505 B3 DNA Binding Superfamily AT2G33860 56.14 0.0 526.0
Ecan3g03893 . 1 505 B3 DNA Binding Superfamily AT2G33860 55.969 0.0 524.0
Ecan3g01826 ACH 104 230 B3 DNA Binding Superfamily AT3G19184 53.543 7.57e-42 147.0
Ecan3g01822 . 71 199 B3 DNA Binding Superfamily AT5G42700 43.411 1.44e-27 107.0
Ecan3g01823 . 71 199 B3 DNA Binding Superfamily AT5G42700 43.411 1.47e-27 107.0
Ecan3g01824 . 71 199 B3 DNA Binding Superfamily AT5G42700 43.411 1.52e-27 107.0
Ecan3g01820 . 71 199 B3 DNA Binding Superfamily AT5G42700 43.411 1.52e-27 107.0
Ecan3g01819 . 71 199 B3 DNA Binding Superfamily AT5G42700 43.411 1.52e-27 107.0
Ecan3g01825 ACH 71 199 B3 DNA Binding Superfamily AT5G42700 43.411 1.39e-27 107.0
Ecan3g01821 . 71 199 B3 DNA Binding Superfamily AT5G42700 43.411 1.02e-27 107.0
Ecan3g01444 . 9 354 B3 DNA Binding Superfamily AT1G59750 57.803 1.12e-142 418.0
Ecan3g01445 . 9 354 B3 DNA Binding Superfamily AT1G59750 57.803 1.12e-142 418.0
Ecan1g03447 . 153 289 B3 DNA Binding Superfamily AT1G05930 26.95 9.76e-10 56.6
Ecan1g03448 . 138 241 B3 DNA Binding Superfamily AT4G03170 33.945 1.79e-07 48.1
Ecan3g03643 . 231 296 B3 DNA Binding Superfamily AT5G18000 34.328 7.61e-06 42.7
Ecan3g03642 . 231 296 B3 DNA Binding Superfamily AT5G18000 34.328 7.61e-06 42.7
Ecan3g03992 . 203 746 B3 DNA Binding Superfamily AT4G32010 35.751 1.21e-84 284.0
Ecan3g03991 . 203 746 B3 DNA Binding Superfamily AT4G32010 35.751 1.21e-84 284.0
Ecan3g03990 . 203 746 B3 DNA Binding Superfamily AT4G32010 35.813 9.20e-85 285.0
Ecan3g01827 ACH 108 230 B3 DNA Binding Superfamily AT3G19184 57.724 6.94e-42 146.0
Ecan4g03247 . 15 488 B3 DNA Binding Superfamily AT1G19220 68.081 0.0 641.0
Ecan4g02484 ACH 102 219 B3 DNA Binding Superfamily AT3G19184 42.373 2.11e-29 111.0
Ecan4g02483 ACH 102 219 B3 DNA Binding Superfamily AT3G19184 42.373 1.23e-29 112.0
Ecan4g02485 ACH 102 219 B3 DNA Binding Superfamily AT3G19184 42.373 9.79e-30 111.0
Ecan1g04579 . 2 693 B3 DNA Binding Superfamily AT2G28350 54.342 0.0 661.0
Ecan4g01817 . 147 289 B3 DNA Binding Superfamily AT1G05930 31.25 4.33e-09 54.7
Ecan4g01822 . 171 289 B3 DNA Binding Superfamily AT1G05930 30.769 7.99e-11 57.0
Ecan4g01833 . 170 289 B3 DNA Binding Superfamily AT1G05930 26.718 1.69e-06 45.4
Ecan4g02134 . 6 262 B3 DNA Binding Superfamily AT4G00260 26.838 6.26e-14 69.7
Ecan4g02135 . 23 137 B3 DNA Binding Superfamily AT3G06160 30.952 4.42e-08 51.6
Ecan4g00953 . 1 445 B3 DNA Binding Superfamily AT2G33860 51.634 4.92e-148 439.0
Ecan1g03575 . 19 592 B3 DNA Binding Superfamily AT3G61830 57.767 0.0 669.0
Ecan4g02482 . 7 226 B3 DNA Binding Superfamily AT3G19184 57.589 4.81e-73 221.0
Ecan4g02481 . 7 226 B3 DNA Binding Superfamily AT3G19184 57.589 4.81e-73 221.0
Ecan4g01807 . 171 289 B3 DNA Binding Superfamily AT1G05930 32.8 9.74e-09 53.5
Ecan5g00015 . 1 469 B3 DNA Binding Superfamily AT1G19220 76.471 0.0 734.0
Ecan5g02643 . 7 616 B3 DNA Binding Superfamily AT4G23980 60.62 0.0 712.0
Ecan5g02645 . 93 616 B3 DNA Binding Superfamily AT4G23980 60.107 0.0 603.0
Ecan5g02644 . 39 616 B3 DNA Binding Superfamily AT4G23980 60.196 0.0 659.0
Ecan5g01784 ACH 280 394 B3 DNA Binding Superfamily AT4G32010 36.207 4.33e-21 90.1
Ecan5g00648 . 15 447 B3 DNA Binding Superfamily AT1G19220 75.342 0.0 660.0
Ecan6g01644 . 1 796 B3 DNA Binding Superfamily AT5G37020 65.707 0.0 1007.0
Ecan6g02555 . 62 772 B3 DNA Binding Superfamily AT5G60450 55.496 0.0 753.0
Ecan6g00351 . 5 891 B3 DNA Binding Superfamily AT1G19850 59.688 0.0 979.0
Ecan6g00352 . 128 891 B3 DNA Binding Superfamily AT1G19850 58.549 0.0 818.0
Ecan6g03024 . 1 668 B3 DNA Binding Superfamily AT4G30080 57.416 0.0 715.0
Ecan1g04206 . 12 666 B3 DNA Binding Superfamily AT4G30080 55.066 0.0 671.0
Ecan7g02077 . 3 672 B3 DNA Binding Superfamily AT4G32010 48.252 0.0 650.0
Ecan7g02078 ACH 3 672 B3 DNA Binding Superfamily AT4G32010 48.252 0.0 650.0
Ecan7g02780 . 3 751 B3 DNA Binding Superfamily AT4G32010 48.692 0.0 702.0
Ecan7g02781 . 8 751 B3 DNA Binding Superfamily AT4G32010 48.622 0.0 694.0
Ecan7g02542 . 39 422 B3 DNA Binding Superfamily AT5G62000 44.221 1.26e-98 312.0
Ecan7g02539 . 133 414 B3 DNA Binding Superfamily AT5G62000 41.924 3.13e-63 213.0
Ecan7g02541 . 133 414 B3 DNA Binding Superfamily AT5G62000 41.924 3.13e-63 213.0
Ecan7g02538 . 133 414 B3 DNA Binding Superfamily AT5G62000 41.924 3.13e-63 213.0
Ecan7g02540 . 133 378 B3 DNA Binding Superfamily AT5G62000 43.651 2.03e-60 202.0
Ecan7g00379 . 1 844 B3 DNA Binding Superfamily AT5G62000 60.07 0.0 969.0
Ecan7g00378 . 1 844 B3 DNA Binding Superfamily AT5G62000 59.837 0.0 969.0
Ecan7g02095 . 4 219 B3 DNA Binding Superfamily AT5G58280 51.77 3.21e-67 211.0
Ecan7g02096 . 4 219 B3 DNA Binding Superfamily AT5G58280 51.77 3.21e-67 211.0
Ecan7g00811 . 7 232 B3 DNA Binding Superfamily AT3G19184 55.508 6.03e-75 227.0
Ecan7g00812 . 7 232 B3 DNA Binding Superfamily AT3G19184 55.508 6.03e-75 227.0
Ecan7g02093 . 4 225 B3 DNA Binding Superfamily AT5G58280 46.383 6.10e-61 193.0
Ecan7g02251 . 21 682 B3 DNA Binding Superfamily AT3G24650 41.454 6.60e-132 406.0
Ecan8g00230 . 6 217 B3 DNA Binding Superfamily AT4G00260 26.941 1.91e-16 76.3
Ecan8g00232 . 4 108 B3 DNA Binding Superfamily AT5G66980 42.453 2.61e-22 89.0
Ecan8g00745 . 1 803 B3 DNA Binding Superfamily AT5G37020 65.361 0.0 980.0
Ecan8g00744 . 1 803 B3 DNA Binding Superfamily AT5G37020 65.441 0.0 984.0
Ecan8g00746 . 82 803 B3 DNA Binding Superfamily AT5G37020 62.619 0.0 832.0
Ecan1g04606 . 62 772 B3 DNA Binding Superfamily AT5G60450 55.691 0.0 730.0
Ecan8g04081 . 7 616 B3 DNA Binding Superfamily AT4G23980 59.565 0.0 696.0
Ecan8g04080 . 7 616 B3 DNA Binding Superfamily AT4G23980 58.32 0.0 674.0
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Ecan B3 6.7e-12 CL0405 TF B3