AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan8g02707 ATGGCAACACAATACCATTTATCAAACATAGCTTTGCAATCACAATCATTGTGCCCCAAACAGCACCTAAGTTTCGGTCCCTCTGTCGGATTGTGTAGGCCGGTTTCGGGTAATAAGGGAAAAGGGTGTTTGAGGGTTGTTTGTAATGCTCGAAAAGTTGTTGATGTTTTAACTAGAAGTGAACCCGAAAGCCGAGATTTAGAAAGGTCAAACAAACAATTATCATGTGTGATGAAGTTTGGTGGATCGTCCGTTGCGTCTGCAGAACGAATGACAGAAGTGGCTGATCTTATTCTAAGTTTTCCGGAAGAGAGTCCGGTTATTGTTTTATCTGCCATGGGCAAGACCACCAACAAGCTTATTGCGGCTGGAGAGAAGGCTGCTAGTTGTGTCTCGGATGTGTCGCAAATTGAAGAATTGAACTTTGTGAGAGAACTACATTATAGGACAGTGGACGAGCTTGGATTAGAGAAAACGCTTGTTCTAGAGCACTTGGTAGAATTAGAGCGGCTTTTAAACGGGATTGCTGCACTGAAGGAGTTTACTCTACGTGCAAGAGACTATCTAGTCTCATTCGGGGAGTGCATGTCCACAAGGATTTTTGCAGCATACTTGAATAAAATTGGTGCCAAAGCGCGGCAATATGATGCATTTGACATCGGATTCATAACAACAGACGATTTCACTAACGCGGATATATTGGAAGCAACTTATCCAGCTGTAGCAAAGAGACTAAACGGTGACTGGGTCAAAGATCCCGCCATCCCTATCGTCACGGGATTTCTTGGAAAGGGTTGGAGAACTTGCGCTGTAACTACATTGGGCAGAGGTGGTAGTGATTTGACTGCCACTACCATTGGTAAAGCACTTGGCTTGCGGGAAATTCAGGTATGGAAAGATGTGGATGGTGTATTGACATGCGACCCTAATATATACTCGGGTGCAGAACCTGTGCCGTATTTGACTTTCGATGAGGCAGCAGAACTTGCATATTTTGGTGCTCAGGTCCTACATCCACAGTCTATGAGGCCCGCAAGAGAGGGTGATATACCTGTTAGGGTTAAAAATTCTTACAACCCTAATGCTCCGGGTACCCTAATCACTAAATCAAGAGATATGAGCAAGGCAGTACTAACAAGCATTGTTTTGAAACGAAATGTTACCATGTTAGACATTGTTAGCACTCGCATGCTTGGTCAATTTGGATTCCTTGCTAAGGTGTTTTCAATTTTTGAGGATCTGGGTATCTCGGTGGATGTTGTAGCTACAAGTGAAGTTAGTATTTCATTAACATTAGATCCTTCAAAGCTTTGGAGTAGGGAGTTGATTCAGCAGGAACTTGATCATGTTGTTGAAGAACTAGAAAAAATTGCCAAAGTGAATCTCCTACAGCACAGATCTATAATTTCGCTCATTGGAAATGTTCAGAGGTCCTCACTTGTATTGGAGAAGGCATTCCGTGTTCTTCGTGTGAACGGAGTGAATGTCCAAATGATTTCACAAGGAGCATCAAAGGTGAATATATCACTGATAGTAAATGACAGTGAGTCAGAAAAGTGTGTGAAAGCTCTACATTCAGCCTTCTTTGAGAGTGAAATGTCGGATCTTGACTGA 1614 42.75 MATQYHLSNIALQSQSLCPKQHLSFGPSVGLCRPVSGNKGKGCLRVVCNARKVVDVLTRSEPESRDLERSNKQLSCVMKFGGSSVASAERMTEVADLILSFPEESPVIVLSAMGKTTNKLIAAGEKAASCVSDVSQIEELNFVRELHYRTVDELGLEKTLVLEHLVELERLLNGIAALKEFTLRARDYLVSFGECMSTRIFAAYLNKIGAKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLNGDWVKDPAIPIVTGFLGKGWRTCAVTTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPNIYSGAEPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLITKSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQELDHVVEELEKIAKVNLLQHRSIISLIGNVQRSSLVLEKAFRVLRVNGVNVQMISQGASKVNISLIVNDSESEKCVKALHSAFFESEMSDLD 537
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan8g02707 537 FunFam Aspartokinase 1 460 529 - -
Ecan8g02707 537 FunFam Aspartokinase 184 367 - -
Ecan8g02707 537 Pfam Amino acid kinase family 76 356 IPR001048 -
Ecan8g02707 537 Pfam ACT domain 469 528 IPR054352 -
Ecan8g02707 537 Gene3D - 388 463 - -
Ecan8g02707 537 CDD ACT-AK1-AT-1 387 464 IPR047896 -
Ecan8g02707 537 ProSitePatterns Aspartokinase signature. 77 85 IPR018042 GO:0004072(InterPro)|GO:0008652(InterPro)
Ecan8g02707 537 ProSiteProfiles ACT domain profile. 392 465 IPR002912 -
Ecan8g02707 537 SUPERFAMILY ACT-like 376 474 IPR045865 -
Ecan8g02707 537 ProSiteProfiles ACT domain profile. 470 537 IPR002912 -
Ecan8g02707 537 NCBIfam aspartate kinase 77 530 IPR001341 GO:0004072(InterPro)|GO:0008652(InterPro)
Ecan8g02707 537 SUPERFAMILY ACT-like 457 531 IPR045865 -
Ecan8g02707 537 SUPERFAMILY Carbamate kinase-like 77 370 IPR036393 -
Ecan8g02707 537 Gene3D Aspartokinase, catalytic domain 114 209 IPR042199 -
Ecan8g02707 537 PANTHER ASPARTATE KINASE 73 530 - GO:0004072(PANTHER)|GO:0005829(PANTHER)|GO:0009089(PANTHER)|GO:0009090(PANTHER)|GO:0009570(PANTHER)
Ecan8g02707 537 Gene3D - 77 367 IPR036393 -
Ecan8g02707 537 Gene3D - 379 529 - -
Ecan8g02707 537 FunFam Aspartokinase 114 209 - -
Ecan8g02707 537 FunFam Aspartokinase 388 459 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan8g02707 K00928 aspartate kinase [EC:2.7.2.4]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr8:37953271 Ecan8g02708 Ecan-Chr8:37953271 tandem
Ecan Ecan-Chr6:34631172 Ecan8g02707 Ecan-Chr8:37953271 wgd