AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01009 ATGGAAAATGGAGGAAACGGGGACCACAACAACTATGGGAGAGGGCAAAATGGTAATAATAGCAATCTTTCGTGGGATTTCTGGGAGATGGGAACGTCCAGGTTCGACTGGATCAACTCTTTCAACGAAGACACAACAGCAGGGCATGCGTTGATGTTCTCTCACCAGGGGAACAATGCGCACCATCATCAACACCACCCAAGTTTGTACGCCGGAGGGTCACACATGCACCCGGACCCTCATCTCACGTGTTTGAAGCTTGGGAAGAGACATTACTTTGAGGATACTGGTGGTCCGTTGTTGGGGGACCGACACGTGGCAGGGTTTCCGATTGGGAAGAGAGGGAGATCGTATGGTGGTGGTGGTGGTGGTGGTGTTGGTGTTGGTGGTCCGTCTTCATCGTCGTCGACGGTGGGAGTGGCGATTCCGAGGTGTCAAGTGGAGGGGTGCCAAGTGGCTCTTGTGAATGCGAAGGATTATCATCGGAGGCATAAGGTGTGTGAGATGCACTCCAAGGCGCCTAATGTGGTGGTGCTTGGGATGGAACAGAGGTTTTGTCAACAGTGTAGCAGGTTTCATGTAGTATCGGAGTTCGATGACACGAAGAGGAGTTGCAGAAGGAGATTAGCAGGGCACAACGAGCGGAGAAGAAAGAGTTCTAACGACTCTATTTCCAGGAACCCTTCTCAAGAGAATAAATCAATGGGTGGGAGATTCCCTTGTATAACATCATCGAGAGGACGTGCTCTCTCTCTTCTGTCATCTAAGACCACTTCCTGGGTTTCTCCGGCTGATCTCTCCTCTCGATCCAGTGCTGCACTCCGAGAGCTGATTGCTGAGAATCGTGCAGCCGTCCTTGCGAGGCAGCTCTTCCTCAACCGTGGCTGGCACCACCACGCAATGGATGATTTGGGTGGTTCACAATCTGGGGTTCTCTCCCACCTGCCCCACCAACACCAAATGTTCCCGGATACTTCCGAATGGGACCGCTATCACGACGCGGGTGCACAAGTGACACTAGATCTTATGCAGGCGCCGGGCTCACCTTTTGGTTTCATGTCAGCAAGGACCAAGTCCAAGGAAGAGGAAGAAGAGTGTTGTGAGATCTGGAACTCTTTGGAGGGAACACACGTGGTTTGA 1140 52.19 MENGGNGDHNNYGRGQNGNNSNLSWDFWEMGTSRFDWINSFNEDTTAGHALMFSHQGNNAHHHQHHPSLYAGGSHMHPDPHLTCLKLGKRHYFEDTGGPLLGDRHVAGFPIGKRGRSYGGGGGGGVGVGGPSSSSSTVGVAIPRCQVEGCQVALVNAKDYHRRHKVCEMHSKAPNVVVLGMEQRFCQQCSRFHVVSEFDDTKRSCRRRLAGHNERRRKSSNDSISRNPSQENKSMGGRFPCITSSRGRALSLLSSKTTSWVSPADLSSRSSAALRELIAENRAAVLARQLFLNRGWHHHAMDDLGGSQSGVLSHLPHQHQMFPDTSEWDRYHDAGAQVTLDLMQAPGSPFGFMSARTKSKEEEEECCEIWNSLEGTHVV 379
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01009 379 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 80 320 IPR044817 GO:0003677(InterPro)
Eupl14g01009 379 Gene3D - 136 206 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Eupl14g01009 379 FunFam Squamosa promoter-binding-like protein 14 136 206 - -
Eupl14g01009 379 MobiDBLite consensus disorder prediction 209 239 - -
Eupl14g01009 379 Pfam SBP domain 145 218 IPR004333 GO:0003677(InterPro)
Eupl14g01009 379 ProSiteProfiles Zinc finger SBP-type profile. 142 219 IPR004333 GO:0003677(InterPro)
Eupl14g01009 379 SUPERFAMILY SBT domain 143 224 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Eupl14g01009 379 MobiDBLite consensus disorder prediction 223 239 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01009 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:15989191 Eupl5g00409 Eupl-Chr5:16671566 dispersed
Eupl Eupl-Chr14:15989191 Eupl14g01010 Eupl-Chr14:16045232 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Eupl11g00167 . 1 359 SBP-box gene family AT5G50670 40.482 3.41e-63 206.0
Eupl11g00966 . 1 245 SBP-box gene family AT1G69170 37.884 8.64e-47 167.0
Eupl6g00991 . 38 174 SBP-box gene family AT1G53160 57.343 1.10e-46 149.0
Eupl4g01335 . 1 259 SBP-box gene family AT1G69170 40.064 3.43e-54 187.0
Eupl4g00249 . 1 358 SBP-box gene family AT5G50670 38.679 1.67e-65 211.0
Eupl13g00766 . 63 181 SBP-box gene family AT3G15270 51.938 1.66e-36 124.0
Eupl13g00862 . 1 1033 SBP-box gene family AT1G20980 53.199 0.0 1030.0
Eupl5g00409 . 32 375 SBP-box gene family AT2G42200 41.919 8.25e-65 209.0
Eupl2g00021 . 42 181 SBP-box gene family AT3G15270 55.862 1.13e-45 147.0
Eupl3g02397 . 42 149 SBP-box gene family AT3G15270 52.252 9.33e-34 116.0
Eupl3g02538 . 1 1033 SBP-box gene family AT1G20980 51.545 0.0 1011.0
Eupl9g01012 . 132 261 SBP-box gene family AT1G02065 64.615 5.59e-54 179.0
Eupl9g00810 . 1 409 SBP-box gene family AT5G43270 40.685 4.06e-89 276.0
Eupl14g01009 . 45 131 SBP-box gene family AT2G33810 63.441 2.79e-36 127.0
Eupl14g01010 . 1 312 SBP-box gene family AT1G02065 48.171 7.93e-81 246.0
Eupl7g01218 . 29 794 SBP-box gene family AT5G18830 48.995 0.0 711.0
Eupl7g01682 . 1 880 SBP-box gene family AT2G47070 52.807 0.0 964.0
Eupl12g01336 . 20 926 SBP-box gene family AT3G60030 50.703 0.0 926.0
Eupl1g00327 . 32 375 SBP-box gene family AT2G42200 43.158 3.86e-69 220.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Eupl SBP 9.1e-33 No_clan TF SBP