AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01176 ATGGCGGAATCGGTCGAATTGCCGAGTCGGTTAGCGATTCTTCCTTTCAGGAACAAGGTTCTGTTGCCTGGTGCAATTATTCGAATTCGATGCACTTCACCGAGCAGTGTGAAGTTGGTGGAGCAAGAGCTATGGCAGAGGGAGGAGAAGGGGTTGATTGGTGTCTTGCCTGTTCGGGACTCTGCTGAGACTACGTCGGTGGATCCCCTGCTATCTCCAGGTGTGGGAACCGATTCTGGGGAGCGAAGCCCGAAAGTTCCCACTGCAACATCAGATTCTCATTCACAGGATGGAAAAAATCAGCAGGAATTAATTCATTGGCACACCAGGGGAGTTGCTGCAAGAGCTTTACATCTCTCAAGAGGAGTGGAGAAACCAAGTGGGAGGGTCACATACATAGTCGTCCTTGAAGGTTTGTGCAGGTTCAGTGTTCAAGAACTTAGTGCAAGAGGAACATATTACACTGCCCGGATCTCTCGTCTTGATATGACAAAGGCTGAGATGGAGCAAGCAGAGCAAGATCCAGATCTTATAGCCCTGTCTCGCCAATTCAAAGCTACTGCTATGGAGTTGATCTCTGTACTTGAGCAGAAGCAGAAAACCGTTGGAAGGACAAAAGTTCTTTTGGAGACAGTTCCTGTGCACAGACTGGCTGATATATTTGTGGCCAGCTTTGAAATAAGCTTTGAGGAGCAGCTATCTATGTTGGATTCAGTCGATTTGAAAATAAGGCTTTCAAAAGCTACTGATTTAGTTGACAGGCATTTGCAGTCAATCCGTGTAGCGGAGAAGATAACACAAAAGGTTGAGGGGCAGTTATCGAAATCACAGAAAGAATTTCTTCTGCGTCAGCAGATGAGGGCTATAAAAGAGGAACTTGGTGACAATGACGATGATGAGGATGATGTGGCAGCCCTGGAAATAAAGATGCAAAGTGCGGGAATGCCTCCCAATGTCTGGAAGCATGCACAGAGAGAGTTACGGAGACTGAGAAAAATGCAACCACAACAACCTGGATATAGCAGTTCGCGTGTGTACCTGGAGCTTCTTGCTGATCTTCCTTGGCAGAATGCTAGTGAAGAACATGAACTGGATTTGAGATCTGCAAAAGAGCGCCTTGACAGTGACCATTATGGTTTAGTCAAAGTCAAACAACGGATTATTGAATATCTGGCTGTTCGAAAGCTTAAACCAGATGCAAGAGGTCCAGTTTTGTGCTTTGTGGGCCCACCAGGTGTTGGAAAGACGTCTTTGGCATCATCCATTGCTTCTGCTCTGGACCGAAAATTTGTACGGATATCTCTCGGTGGTGTCAAGGATGAGGCAGATATTAGAGGGCATAGAAGGACATACATTGGAAGCATGCCAGGTCGTCTTATTGACGGATTGAAGAGAGTAGCTGTTAGCAATCCAGTTATGCTACTAGATGAGATTGACAAAACTGGTTCTGATGTCCGTGGGGATCCGGCTTCAGCCTTACTGGAGGTTCTTGACCCAGAGCAGAACAAAACATTCAATGATCACTATTTGAATGTTCCATTCGACCTTTCAAAGGTGATTTTTGTTGTGACTGCAAACAGGGTTCAGCCTATTCCTCCAGCACTCTTGGATCGCATGGAAGTAATTGAGCTGCCCGGATATACACCTGAAGAAAAGCTAAGAATAGCCATGCAGCATTTAATTCCACGAGTTCTTGATCAGCATGGTTTGAGCTATGAGTTCCTTCAAATTCCTGAGGCTATGGTGAAGCTTGTAATTCAGAGATATACTAGAGAAGCTGGTGTTCGGAATCTGGAGAGGAACTTAGCTGCCTTAGCTCGTGCTGCTGCAGTTAGAGTTGCTGAGCAAGAACATGCAGTCCCGCTCGGTAAGGTTGTGCAACCAATGGCTGCACCACTGCTTGATACCAGACTTGCAGATGGGGCTGAAGTAGACATGGAAGTTATCCCAATGGGCGTTAACAATCAAGAGATATCAAATGCTTTCAGGAATACCTCGGCTTTGGTTGTTGATGAGGCTATGCTAGAAAAAGTACTAGGGCCTCCGAGGTATGATGATAGAGAAACTACAGAACGAGTTGCAACACCTGGAATATCAGTTGGGCTTGTGTGGACCTCCTTTGGTGGGGAGGTTCAGTTTGTTGAGGCCACAACAATGGCAGGAAAGGGTGATTTGCATCTCACTGGGCAACTTGGTGATGTTATCAAAGAATCAGCACAGATAGCATTAACATGGGTAAGAGCAAGGGCAGCAGACCTTAAGTTGGTAACTGCTGGAGAAATCAACTTGCTGGAGGGTCGGGATATTCATATACATTTTCCCGCAGGGGCTGTACCCAAGGATGGACCCTCGGCAGGTGTGACTCTGGTAACATCATTGGTTTCACTATTCAGTCAGAAAAGAGTACGAGCAGACACAGCAATGACAGGAGAAATGAGTCTGAGGGGCCTTGTGTTACCTGTTGGCGGTATCAGGGATAAGATATTGGCAGCACATCGTTACGGTATTAAAAGAGTTATCCTGCCAGAGAGGAACCTGAAAGACTTAGTCGAAGTGCCATCAACTGTTCTTGCCAGCCTGGAGATACTGCTCGCAAAGAGGATGGAAGACGTGTTGGAACATGCATTTGAAGCCGACCAGTGTATAGACCTCAAATCATTCGGAAGCTTCCTTTGTTGA 2679 46.32 MAESVELPSRLAILPFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQREEKGLIGVLPVRDSAETTSVDPLLSPGVGTDSGERSPKVPTATSDSHSQDGKNQQELIHWHTRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFSVQELSARGTYYTARISRLDMTKAEMEQAEQDPDLIALSRQFKATAMELISVLEQKQKTVGRTKVLLETVPVHRLADIFVASFEISFEEQLSMLDSVDLKIRLSKATDLVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDDEDDVAALEIKMQSAGMPPNVWKHAQRELRRLRKMQPQQPGYSSSRVYLELLADLPWQNASEEHELDLRSAKERLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALDRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVAVSNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVVTANRVQPIPPALLDRMEVIELPGYTPEEKLRIAMQHLIPRVLDQHGLSYEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVRVAEQEHAVPLGKVVQPMAAPLLDTRLADGAEVDMEVIPMGVNNQEISNAFRNTSALVVDEAMLEKVLGPPRYDDRETTERVATPGISVGLVWTSFGGEVQFVEATTMAGKGDLHLTGQLGDVIKESAQIALTWVRARAADLKLVTAGEINLLEGRDIHIHFPAGAVPKDGPSAGVTLVTSLVSLFSQKRVRADTAMTGEMSLRGLVLPVGGIRDKILAAHRYGIKRVILPERNLKDLVEVPSTVLASLEILLAKRMEDVLEHAFEADQCIDLKSFGSFLC 892
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01176 892 FunFam Lon protease homolog 304 353 - -
Eupl14g01176 892 SUPERFAMILY Ribosomal protein S5 domain 2-like 696 876 IPR020568 -
Eupl14g01176 892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 621 IPR027417 -
Eupl14g01176 892 Gene3D - 695 886 IPR014721 -
Eupl14g01176 892 Pfam Lon protease (S16) C-terminal proteolytic domain 670 877 IPR008269 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Eupl14g01176 892 FunFam Lon protease homolog 2, peroxisomal 172 297 - -
Eupl14g01176 892 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 883 IPR027501 GO:0004252(InterPro)|GO:0006515(InterPro)
Eupl14g01176 892 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 6 883 IPR027065 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0005524(InterPro)|GO:0005782(PANTHER)|GO:0006625(PANTHER)|GO:0016485(PANTHER)|GO:0030163(InterPro)
Eupl14g01176 892 MobiDBLite consensus disorder prediction 64 101 - -
Eupl14g01176 892 FunFam Lon protease homolog 2, peroxisomal 366 544 - -
Eupl14g01176 892 PIRSF Lon-proteas 1 626 IPR004815 GO:0004176(InterPro)|GO:0005524(InterPro)|GO:0006508(InterPro)
Eupl14g01176 892 PIRSF Lon-proteas 651 880 IPR004815 GO:0004176(InterPro)|GO:0005524(InterPro)|GO:0006508(InterPro)
Eupl14g01176 892 SMART AAA-5 401 546 IPR003593 GO:0016887(InterPro)
Eupl14g01176 892 ProSiteProfiles Lon proteolytic domain profile. 693 878 IPR008269 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Eupl14g01176 892 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 781 789 IPR008268 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Eupl14g01176 892 SUPERFAMILY PUA domain-like 10 253 IPR015947 -
Eupl14g01176 892 Gene3D - 1 161 IPR046336 -
Eupl14g01176 892 Gene3D - 172 297 - -
Eupl14g01176 892 Gene3D - 366 544 IPR027417 -
Eupl14g01176 892 SMART lon-5 10 254 IPR003111 -
Eupl14g01176 892 FunFam Lon protease homolog 2, peroxisomal 690 881 - -
Eupl14g01176 892 NCBIfam endopeptidase La 13 876 IPR004815 GO:0004176(InterPro)|GO:0005524(InterPro)|GO:0006508(InterPro)
Eupl14g01176 892 CDD RecA-like-Lon 366 547 - -
Eupl14g01176 892 Pfam ATP-dependent protease La (LON) substrate-binding domain 11 254 IPR003111 -
Eupl14g01176 892 MobiDBLite consensus disorder prediction 83 98 - -
Eupl14g01176 892 Pfam Lon protease AAA+ ATPase lid domain 567 618 IPR054594 -
Eupl14g01176 892 ProSiteProfiles Lon N-terminal domain profile. 11 256 IPR003111 -
Eupl14g01176 892 Gene3D - 305 353 - -
Eupl14g01176 892 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 696 712 - -
Eupl14g01176 892 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 778 797 - -
Eupl14g01176 892 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 808 827 - -
Eupl14g01176 892 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 831 849 - -
Eupl14g01176 892 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 409 428 - -
Eupl14g01176 892 Gene3D - 545 684 - -
Eupl14g01176 892 Pfam ATPase family associated with various cellular activities (AAA) 405 542 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01176 K01338 ATP-dependent Lon protease [EC:3.4.21.53]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr10:11928036 Eupl14g01176 Eupl-Chr14:25524569 transposed
Eupl Eupl-Chr14:25524569 Eupl8g00956 Eupl-Chr8:27103389 wgd