AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01239 ATGGGGAGACTTCCACACAGCGGAGGCCCAGCCTTCCGCTTCACAGCCACTGAGGTGGCTGAGATGGAGGCTTGTTTGCAAGAAGCCAATAATGCAATACCAAGTCGTGAAGTTCTCGGCACTCTTGCAGAGAAGTTCAGTGCGTCAGCAGATCGAGCAGGAAAGATTGTTGTGCAATCGAAGCAGGTGTGGAATTGGTTCCAAAATAGAAGGTACGCTCAGAAGGCAAAATTGATTAAGGCTCCTGGGAAGCTAAGTGTATCGCCTATGCCTCGTGATGATTTGGTTCAAATGAGAAATGTGCCTCATTCCATACCCATTCCTTCAGGAAGGAATGCTTTGGATAATACTCAGATGGAGTTTGAAGCCAAGTCAGCTAGGGATGGGGCATGGTATGATGTTGCGACTTTTGTTTCTCATAGAATGTTTGAGACAGGTGATCCGGAAGTTCGAGTTCGGTTTTCAGGATTTGGGTCAGAGGAGGATGAGTGGGTTAATGTGCGCAAGCATGTGAGACAACGTTCTCTCCCTTGTGAAGCATCAGAATGTGTTGCCGTACTTCCTGGAGACCTCATTCTTTGTTTTCAGGAAGGTAAAGATCAGGCTCTTTACTTTGATGCGCACGTCCTTGATGCACAAAGACGGAGACATGATGTACGAGGATGTCGCTGTAGGTTCCTCGTTCGTTATGATCATGATCAGTCTGAGGAAATTGTCCCACTGAGAAAGGTGTGCCGTCGGCCAGAAACTGATTACAGGTTGCAACTACTGCATGCTTCAAAGGAGTACACATCCGTGGACCTGCGGAGCACGGGGAAAGATCCTTCTCTTGTTGGCACTTCAAGGGATTTCAGTTCTGCAGATCAAAAGACAAGGAAGCAGTATAAACTGGAGGGGAATGCAGATGATGTGGTTTTGGTGACTCCCTCTTCTCATGCCAAAGAGCCCATAACCATGGAAACTACACTGGCAGCAACAATGAAGGCTGAAAATTGTAGTGATAATAATATGGGAACTTCTGATGACCGTACTGGTGATGCTGCGTTGACAGTTGGCACGGCCACCAGCACTGGTACTGGCTCTGGCATGAGTGAAAATATGGAAGAAGGAAGCTAG 1116 47.49 MGRLPHSGGPAFRFTATEVAEMEACLQEANNAIPSREVLGTLAEKFSASADRAGKIVVQSKQVWNWFQNRRYAQKAKLIKAPGKLSVSPMPRDDLVQMRNVPHSIPIPSGRNALDNTQMEFEAKSARDGAWYDVATFVSHRMFETGDPEVRVRFSGFGSEEDEWVNVRKHVRQRSLPCEASECVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPETDYRLQLLHASKEYTSVDLRSTGKDPSLVGTSRDFSSADQKTRKQYKLEGNADDVVLVTPSSHAKEPITMETTLAATMKAENCSDNNMGTSDDRTGDAALTVGTATSTGTGSGMSENMEEGS 371
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01239 371 Gene3D - 116 177 - -
Eupl14g01239 371 Gene3D - 10 82 - -
Eupl14g01239 371 Gene3D - 178 250 - -
Eupl14g01239 371 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677(InterPro)
Eupl14g01239 371 SMART HOX-1 7 81 IPR001356 GO:0003677(InterPro)
Eupl14g01239 371 MobiDBLite consensus disorder prediction 268 285 - -
Eupl14g01239 371 SUPERFAMILY Homeodomain-like 6 75 IPR009057 -
Eupl14g01239 371 Pfam SAWADEE domain 118 245 IPR032001 GO:0003682(InterPro)
Eupl14g01239 371 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 13 332 IPR039276 -
Eupl14g01239 371 MobiDBLite consensus disorder prediction 351 371 - -
Eupl14g01239 371 MobiDBLite consensus disorder prediction 268 292 - -
Eupl14g01239 371 CDD homeodomain 13 75 IPR001356 GO:0003677(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01239 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr10:28924477 Eupl14g01239 Eupl-Chr14:27579602 dispersed
Eupl Eupl-Chr14:27579602 Eupl9g00208 Eupl-Chr9:6966372 dispersed
Eupl Eupl-Chr14:27579602 Eupl8g01348 Eupl-Chr8:34475611 wgd
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Eupl SAWADEE 1.7e-46 CL0010 TF HB-other