AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00110 ATGGCAGAGAACAGAGAAGCATTGCTGAAGAAGGTTTACTATGAGAATTGCCCAGGTTGCAAGGTGGATCAACTTAATGAGACGCGAAGAGGAATACCTTTCAAAGAACTTTTTTATGTATGGATTGTGGTACTTGGCACTGCTTTGCCAATATCGTCTCTCTTTCCATTCCTATACTTCATGATAAGGGACTTCCATATTGCAAAAAGGGAGGAAGATATTGGATACTATGCGGGTTTTGTGGGATCTTCGTATATGTTTGGAAGAGCTTTGACTTCTGTTTTTTGGGGAGTTGTAGCTGATCGATATGGTCGAAAACCTGTTATAGTGATTGGCACAATTACAGTGGTTTTGTTCAACACACTCTTTGGCCTCAGTACAAACTTCTGGATGGCAGTTTCTATGAGGTTTCTTCTTGGAAGTTTGAATGGTCTACTTGGCCCAATAAAGGCATATGCTGCTGAAGTTTGCCGACAAGAACATCAAGCTCTGGGAATGTCACTTGTTAGTACAGCATGGGGCATGGGTTTGATCATTGGTCCAGCTCTTGGAGGTTTCCTTGCACAGCCTGCAGAGAAATATCCAAATATATTTTCTAAAGAATCTCTATTTGGGAGGTTTCCGTACTTCTTACCCTGCCTCTGTATATCAATCTTTGCAGTAGCTGTACTTATTGCTTGTTGGTGGCTTCCAGAAACATTGCACATGCATAATGGAAACAGCAAGGAAGGATATGACTCATACGAAGCTTTGGAGGCTCCATCCAATGGGTGTGATGTGAAAGCAAAGATACAAGAGACTGGCGGAAGAGGATCAGATTCTAAAGAAAACCTCTTAAAGAATTGGCCCTTAATGTCATCTATAATTGTATATTGTGTTTTCTCACTTCATGATATGGCCTATACAGAGATATTCTCATTATGGGCTGTTAGTCCTAGAAAGTATGGGGGATTGAGCTACTCAACTAATGATGTTGGTGAAGTTCTTTCAATCTCAGGCCTTGGCCTTCTACTCTTTCAACTTTTTCTATATCCGATGGCTGCGAAGATTCTTGGGCCCATCATGGTATCTCGCATTTCAGCGGTCTTATCCATACCATTGCTGTCAAGTTACCCCTTTATAGCTATGCTATCTGGGTTCGTCCTTTCAGTGTTAATAAATTGTGCATCTGCGTTGAAGAATGTTTTCTCTGTGTCAATTGTCACTGGATTATTCCTTCTACAAAACAATGCTGTGGCCCAGCACCAAAGAGGAGCTGCAAATGGCATTTCTATGACTGCACAGTCTCTTTTCAAAGCAGCTGGTCCAGCTGGAGGAGGTGCTATTTTTTCTTGGGCACAAAAGCGTAGGGATGCTTCCTTCCTCCCAGGTAATCTGATGGTTTTCTTCATCCTAAATGTGATTGAGGTGATTGGAGTGCTAATGACCTTCAAACCATTTCTAGCTCAACCACTTGAGTAG 1461 41.89 MAENREALLKKVYYENCPGCKVDQLNETRRGIPFKELFYVWIVVLGTALPISSLFPFLYFMIRDFHIAKREEDIGYYAGFVGSSYMFGRALTSVFWGVVADRYGRKPVIVIGTITVVLFNTLFGLSTNFWMAVSMRFLLGSLNGLLGPIKAYAAEVCRQEHQALGMSLVSTAWGMGLIIGPALGGFLAQPAEKYPNIFSKESLFGRFPYFLPCLCISIFAVAVLIACWWLPETLHMHNGNSKEGYDSYEALEAPSNGCDVKAKIQETGGRGSDSKENLLKNWPLMSSIIVYCVFSLHDMAYTEIFSLWAVSPRKYGGLSYSTNDVGEVLSISGLGLLLFQLFLYPMAAKILGPIMVSRISAVLSIPLLSSYPFIAMLSGFVLSVLINCASALKNVFSVSIVTGLFLLQNNAVAQHQRGAANGISMTAQSLFKAAGPAGGGAIFSWAQKRRDASFLPGNLMVFFILNVIEVIGVLMTFKPFLAQPLE 486
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00110 486 Gene3D MFS general substrate transporter like domains 35 474 IPR036259 -
Eupl1g00110 486 Pfam Major Facilitator Superfamily 40 436 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Eupl1g00110 486 ProSiteProfiles Major facilitator superfamily (MFS) profile. 36 484 IPR020846 GO:0022857(InterPro)
Eupl1g00110 486 CDD MFS-SLC46-TetA-like 40 478 - -
Eupl1g00110 486 FunFam Protein ZINC INDUCED FACILITATOR-LIKE 1 35 476 - -
Eupl1g00110 486 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 31 478 - -
Eupl1g00110 486 SUPERFAMILY MFS general substrate transporter 35 477 IPR036259 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00110 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr1:3729318 Eupl1g00112 Eupl-Chr1:3912382 dispersed
Eupl Eupl-Chr1:3729318 Eupl1g00111 Eupl-Chr1:3841632 tandem
Eupl Eupl-Chr1:3729318 Eupl5g00170 Eupl-Chr5:4394936 wgd