AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00168 ATGGGGGAGAGGCCGTTCACTTACATTGGAAGAGAGAAGAACAGCGAAGCAAAGATGGCTAAGAGCAAAGTTCTTGTAGTTGGTGGCACAGGGTACTTGGGCAAGAGGCTCGTGAAGGCTAGTTTAGCCCATGGTCACGTTACGTACGTCCTTCATCGGCGGGAGATCGGTGTCGATATCGAAAAGCTCCAGATGCTCCTGTCGTTCAAGGAGCAAGGAGCCCAACTCATCGAGGGGTCATTTAGCGACCATCAGAGCCTCGTCGATGCCGTTAAACTAGTCGATGTTGTCATATGTGCCATCTCTGGTGTCCACATCAGGAGCCACCATATCCTCCTACAGCTCAAGCTTGTTGACGCCATCAAAGAAGCTGGAAACGTTAAGCGGTTCTTGCCTTCGGAGTTTGGCACGGACCCGGCACAGATGGTTGATGCTATGGAACCTGGAAGGGTGACGTTTGACGACAAGATGGTCATTAGGAAGGTGATCGAAGATGCTGGAATTCCTTTCACTTACGTCTCTGCAAACTGCTTTGCCGGATACTTCATCGGTGGTCTATGTCAACCGGGTAGGATCACTCCTTCTAGGGAAAGCGTGGTCATGTTGGGAGATGGCAATCAAAAAGCAATTTATCTGGACGAGGACGACATTGCCACGTACACCATTAAAACCATCAATGATCCTCGTACACTAAACAAAACGCTTTACCTCAGGCCACCAGAAAACATCCTCTCTCAGAGAGAAGTAGTCAAAATATGGGAGAAACTCATTGGGAAAGTACTGGACAAGTCCACCATCTCCAAGGAAGAATTTCTAGCTACCATGAAAGGCCAAGATCTTTCACAGCAAATTGGACTGACGCATTACTATCATGTTTTCTACGAGGGTTGCCTTACAAATTTCGAAATAGGCAATGACGGAGAGGAAGCGTCAAATCTTTATCCAGAGGTCAAGTACACCAGAGTGGAGGAATATCTGAAACGCTATTTATAG 993 47.53 MGERPFTYIGREKNSEAKMAKSKVLVVGGTGYLGKRLVKASLAHGHVTYVLHRREIGVDIEKLQMLLSFKEQGAQLIEGSFSDHQSLVDAVKLVDVVICAISGVHIRSHHILLQLKLVDAIKEAGNVKRFLPSEFGTDPAQMVDAMEPGRVTFDDKMVIRKVIEDAGIPFTYVSANCFAGYFIGGLCQPGRITPSRESVVMLGDGNQKAIYLDEDDIATYTIKTINDPRTLNKTLYLRPPENILSQREVVKIWEKLIGKVLDKSTISKEEFLATMKGQDLSQQIGLTHYYHVFYEGCLTNFEIGNDGEEASNLYPEVKYTRVEEYLKRYL 330
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00168 330 Gene3D - 176 326 - -
Eupl1g00168 330 CDD PCBER-SDR-a 23 325 IPR045312 GO:0016491(InterPro)
Eupl1g00168 330 PANTHER PINORESINOL REDUCTASE-RELATED 21 329 IPR050608 -
Eupl1g00168 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 21 278 IPR036291 -
Eupl1g00168 330 Gene3D - 22 315 - -
Eupl1g00168 330 Pfam NmrA-like family 24 287 IPR008030 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00168 K21568 pinoresinol/lariciresinol reductase [EC:1.23.1.1 1.23.1.2 1.23.1.3 1.23.1.4]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr1:5440039 Eupl3g01920 Eupl-Chr3:47807370 dispersed
Eupl Eupl-Chr1:5428362 Eupl1g00168 Eupl-Chr1:5440039 tandem
Eupl Eupl-Chr1:5440039 Eupl1g00169 Eupl-Chr1:5471576 tandem