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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00173 ATGGCTCTCACTATATTCGCCCTTGCCATCATCTTCATCTTTCTGGCTTACAAGCTCTATCAACGGTTCAGATTTAAGCTCCCACCGGGCCCACGTCCATGGCCCATCGTCGGAAACCTCTACGATATAAAGCCGGTGAGGTTCCGGTGCTTCGCCGATTGGTCGCAGACTTACGGACCGATCATGTCGGTATGGTTCGGTTCGACGTTGAACGTGGTGGTGACGAATTCGGAGTTGGCTAAGGAAGTACTTAAAGAGAAAGATCAACAATTAGCGGATAGGCATAGAAGTCGATCAGCTGCTAAATTTAGTAGGGATGGGCAGGATCTTATATGGGCCGATTATGGGCCTCACTATGTTAAGGTTAGAAAGGTTTGCACTCTTGAGCTCTTCACTCCTAAGAGGCTTGAGTCTCTCCGGCCCATTAGAGAAGATGAAGTCACAGCCATGGTTGAATCCATCTTCAGAGATTGCACCAAGCCAGTGAAATCAAATTTAGGAAAAATCGCAGCTTTACGAAAGAAATAA 528 46.97 MALTIFALAIIFIFLAYKLYQRFRFKLPPGPRPWPIVGNLYDIKPVRFRCFADWSQTYGPIMSVWFGSTLNVVVTNSELAKEVLKEKDQQLADRHRSRSAAKFSRDGQDLIWADYGPHYVKVRKVCTLELFTPKRLESLRPIREDEVTAMVESIFRDCTKPVKSNLGKIAALRKK 175
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00173 175 Pfam Cytochrome P450 28 161 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Eupl1g00173 175 SUPERFAMILY Cytochrome P450 20 158 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Eupl1g00173 175 Gene3D Cytochrome P450 19 169 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Eupl1g00173 175 PANTHER CYTOCHROME P450 98A9 4 158 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00173 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr1:5667905 Eupl9g00602 Eupl-Chr9:14561608 dispersed
Eupl Eupl-Chr1:5645660 Eupl1g00173 Eupl-Chr1:5667905 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Eupl11g00254 . 11 562 Monolignol Biosynthesis gene family AT5G63380 42.857 2.15e-148 434.0
Eupl2g01286 . 12 343 Monolignol Biosynthesis gene family AT5G54160 44.345 1.72e-102 306.0
Eupl2g01279 . 1 357 Monolignol Biosynthesis gene family AT4G39330 62.57 1.58e-161 454.0
Eupl6g00861 . 34 348 Monolignol Biosynthesis gene family AT5G54160 41.824 1.97e-82 253.0
Eupl6g00860 . 249 378 Monolignol Biosynthesis gene family AT1G77520 39.231 4.70e-19 80.9
Eupl6g00859 . 25 348 Monolignol Biosynthesis gene family AT5G54160 41.104 2.82e-83 255.0
Eupl3g01198 . 26 259 Monolignol Biosynthesis gene family AT4G34050 91.453 4.60e-165 454.0
Eupl3g01134 . 55 346 Monolignol Biosynthesis gene family AT3G19450 65.068 1.82e-120 349.0
Eupl3g01130 . 1 356 Monolignol Biosynthesis gene family AT3G19450 76.124 0.0 525.0
Eupl3g00628 . 1 254 Monolignol Biosynthesis gene family AT1G72680 25.461 5.25e-11 60.5
Eupl3g00739 . 40 344 Monolignol Biosynthesis gene family AT4G37970 25.141 9.52e-15 73.2
Eupl8g00639 . 21 286 Monolignol Biosynthesis gene family AT4G37980 27.338 1.66e-17 80.9
Eupl8g00602 . 26 544 Monolignol Biosynthesis gene family AT4G05160 29.135 3.35e-57 199.0
Eupl2g00307 . 36 360 Monolignol Biosynthesis gene family AT5G54160 33.837 5.18e-57 187.0
Eupl4g02214 . 40 167 Monolignol Biosynthesis gene family AT4G37970 29.577 3.00e-11 62.4
Eupl8g01102 . 32 340 Monolignol Biosynthesis gene family AT2G21730 26.453 2.29e-18 84.0
Eupl8g01140 . 9 305 Monolignol Biosynthesis gene family AT5G58490 33.77 3.19e-45 154.0
Eupl8g01205 . 34 560 Monolignol Biosynthesis gene family AT1G65060 71.536 0.0 802.0
Eupl8g01207 . 194 531 Monolignol Biosynthesis gene family AT1G20510 22.632 3.72e-14 75.1
Eupl1g01450 . 1 544 Monolignol Biosynthesis gene family AT4G05160 67.463 0.0 794.0
Eupl12g00322 . 12 347 Monolignol Biosynthesis gene family AT5G54160 35.277 4.07e-62 201.0
Eupl12g00262 . 12 347 Monolignol Biosynthesis gene family AT5G54160 36.686 6.41e-65 210.0
Eupl1g00172 . 1 508 Monolignol Biosynthesis gene family AT2G40890 55.135 0.0 589.0
Eupl1g00173 . 1 172 Monolignol Biosynthesis gene family AT2G40890 72.989 7.59e-89 267.0
Eupl13g01368 . 31 340 Monolignol Biosynthesis gene family AT2G21730 25.507 3.83e-13 68.2
Eupl13g01370 . 39 344 Monolignol Biosynthesis gene family AT4G39330 22.449 3.57e-12 65.1
Eupl4g00372 . 11 562 Monolignol Biosynthesis gene family AT5G63380 52.432 0.0 575.0
Eupl4g00371 . 2 562 Monolignol Biosynthesis gene family AT5G63380 57.699 0.0 655.0
Eupl1g00870 . 1 503 Monolignol Biosynthesis gene family AT2G30490 84.891 0.0 883.0
Eupl9g01160 . 14 349 Monolignol Biosynthesis gene family AT5G54160 61.243 1.62e-156 446.0
Eupl9g01266 . 1 280 Monolignol Biosynthesis gene family AT1G15950 69.444 1.33e-140 398.0
Eupl14g00774 . 116 197 Monolignol Biosynthesis gene family AT2G02400 43.529 1.58e-17 73.9
Eupl14g00775 . 65 240 Monolignol Biosynthesis gene family AT2G02400 38.122 1.99e-31 115.0
Eupl14g00701 . 37 255 Monolignol Biosynthesis gene family AT4G39330 27.397 9.93e-07 48.1
Eupl10g00860 . 204 558 Monolignol Biosynthesis gene family AT4G19010 27.835 1.29e-39 151.0
Eupl8g00079 . 15 363 Monolignol Biosynthesis gene family AT5G54160 58.689 5.54e-153 433.0
Eupl8g00078 . 238 363 Monolignol Biosynthesis gene family AT5G54160 62.698 9.01e-56 176.0
Eupl8g00077 . 15 363 Monolignol Biosynthesis gene family AT5G54160 61.254 9.69e-168 471.0
Eupl8g00076 . 1 361 Monolignol Biosynthesis gene family AT5G54160 72.452 0.0 552.0
Eupl8g00075 . 261 283 Monolignol Biosynthesis gene family AT1G63140 69.565 1.22e-06 42.0
Eupl8g00040 . 3 355 Monolignol Biosynthesis gene family AT1G72680 76.836 0.0 555.0
Eupl8g00039 . 3 298 Monolignol Biosynthesis gene family AT1G72680 70.034 4.92e-147 415.0
Eupl8g00028 . 48 278 Monolignol Biosynthesis gene family AT3G62000 80.519 8.04e-141 399.0
Eupl13g00257 . 71 461 Monolignol Biosynthesis gene family AT5G63380 23.179 1.03e-11 65.9
Eupl13g00359 . 48 520 Monolignol Biosynthesis gene family AT4G36220 70.947 0.0 721.0
Eupl13g00617 . 19 259 Monolignol Biosynthesis gene family AT4G34050 83.402 2.26e-157 435.0
Eupl13g00672 . 1 359 Monolignol Biosynthesis gene family AT3G19450 71.059 0.0 518.0
Eupl13g00740 . 33 336 Monolignol Biosynthesis gene family AT2G21730 26.0 2.29e-11 62.8
Eupl13g00746 . 3 542 Monolignol Biosynthesis gene family AT1G20510 74.908 0.0 843.0
Eupl13g00879 . 220 316 Monolignol Biosynthesis gene family AT1G80820 41.237 7.92e-20 80.1
Eupl10g01090 . 239 350 Monolignol Biosynthesis gene family AT1G33030 40.179 1.16e-27 102.0
Eupl10g01089 . 196 299 Monolignol Biosynthesis gene family AT1G51990 58.654 3.38e-45 148.0
Eupl10g01088 . 270 381 Monolignol Biosynthesis gene family AT1G77530 41.071 2.43e-23 91.7
Eupl9g00399 . 16 361 Monolignol Biosynthesis gene family AT5G54160 44.571 5.46e-109 321.0
Eupl9g00390 . 31 362 Monolignol Biosynthesis gene family AT1G51990 29.586 3.61e-51 172.0
Eupl9g00345 . 7 154 Monolignol Biosynthesis gene family AT4G26220 77.703 4.19e-82 240.0
Eupl9g00343 . 8 232 Monolignol Biosynthesis gene family AT4G26220 64.159 1.57e-104 300.0
Eupl14g00467 . 26 544 Monolignol Biosynthesis gene family AT4G05160 30.246 1.37e-61 209.0
Eupl5g00617 . 261 363 Monolignol Biosynthesis gene family AT1G51990 41.905 7.94e-14 65.1
Eupl5g00616 . 34 241 Monolignol Biosynthesis gene family AT5G54160 31.132 8.64e-20 85.9
Eupl5g00615 . 34 348 Monolignol Biosynthesis gene family AT5G54160 33.125 2.86e-44 154.0
Eupl5g00413 . 201 497 Monolignol Biosynthesis gene family AT1G20480 27.273 4.19e-23 104.0
Eupl5g02210 . 2 324 Monolignol Biosynthesis gene family AT5G58490 71.827 0.0 502.0
Eupl5g02375 . 1 503 Monolignol Biosynthesis gene family AT2G30490 85.885 0.0 891.0
Eupl5g02423 . 65 290 Monolignol Biosynthesis gene family AT1G72680 27.119 5.58e-07 48.9
Eupl2g00018 . 34 289 Monolignol Biosynthesis gene family AT5G54160 33.846 4.06e-45 154.0
Eupl10g00270 . 1 322 Monolignol Biosynthesis gene family AT1G15950 78.571 0.0 514.0
Eupl7g00282 . 34 347 Monolignol Biosynthesis gene family AT5G54160 40.19 1.14e-72 228.0
Eupl3g02360 . 4 542 Monolignol Biosynthesis gene family AT1G20510 67.528 0.0 771.0
Eupl3g02359 . 4 542 Monolignol Biosynthesis gene family AT1G20510 68.635 0.0 771.0
Eupl3g02358 . 4 542 Monolignol Biosynthesis gene family AT1G20510 68.624 0.0 768.0
Eupl3g02357 . 401 543 Monolignol Biosynthesis gene family AT1G20510 83.217 1.68e-83 261.0
Eupl3g02201 . 9 354 Monolignol Biosynthesis gene family AT4G39330 52.742 8.16e-133 383.0
Eupl3g02050 . 1 520 Monolignol Biosynthesis gene family AT4G36220 71.456 0.0 746.0
Eupl9g00842 . 43 502 Monolignol Biosynthesis gene family AT2G30490 65.948 0.0 636.0
Eupl9g00808 . 6 536 Monolignol Biosynthesis gene family AT1G62940 74.672 0.0 821.0
Eupl5g00001 . 65 290 Monolignol Biosynthesis gene family AT1G72680 27.119 4.30e-07 48.9
Eupl5g01663 . 1 544 Monolignol Biosynthesis gene family AT4G05160 69.541 0.0 812.0
Eupl5g01739 . 1 359 Monolignol Biosynthesis gene family AT3G53140 73.829 0.0 561.0
Eupl5g01717 . 287 432 Monolignol Biosynthesis gene family AT5G63380 46.309 2.68e-36 130.0
Eupl5g01716 . 3 241 Monolignol Biosynthesis gene family AT4G05160 40.964 6.30e-49 168.0
Eupl13g00890 . 220 316 Monolignol Biosynthesis gene family AT1G80820 40.206 1.46e-19 79.3
Eupl3g00033 . 4 318 Monolignol Biosynthesis gene family AT2G02400 67.296 1.74e-168 469.0
Eupl12g00412 . 4 546 Monolignol Biosynthesis gene family AT1G20510 44.444 6.03e-164 475.0
Eupl12g00390 . 11 309 Monolignol Biosynthesis gene family AT1G72680 27.829 3.71e-16 77.0
Eupl13g01101 . 24 349 Monolignol Biosynthesis gene family AT4G37990 25.683 1.68e-17 81.6
Eupl5g00212 . 61 92 Monolignol Biosynthesis gene family AT1G72680 56.25 6.17e-06 42.0