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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00196 ATGCTTCACTTCTCTTCATCTTCGCAGATTCTGGGGTTCTTTATCATCTTGTCTTCATTCTTCTTCATAGTTTCTGCATCGATTTCAGTCTCTAATGGCACAACCATATACGACCTCCTCCCCGAGTTCGGACTCCCGAGTGGACTCTTACCCGACTCGATCCAAGACTTCTCTCTCTCCGACGACGGTACCTTTGTCGTCGACTTGTCAAACCCATGCTACGTTCAGTTCGACTACTTGGTCTACTACGATCGCCGAATCACCGGTACTCTCAAGTACGGTTCGATCACAAGTCTTAAAGGAATTAAGGTGAAGCGCGTCTTGTTGTGGCTCGATGTCGATGAGATCAGGGTCGATTTGCCGCCATCCGATTACATTTACTTTCAGGTTGGGTGGGTCAACAAGAAGCTTGATGTTGGCCAGTTCAAGACTGTCCATTCTTGTCGCGATGATGGGATTTCTTGTCAAGGCTCTTGGAAAGATGTTTTAAAGGTTCCAACGCCGCCTATAAGAGAATTACCAATGCTACTTACAGAGTAG 540 46.67 MLHFSSSSQILGFFIILSSFFFIVSASISVSNGTTIYDLLPEFGLPSGLLPDSIQDFSLSDDGTFVVDLSNPCYVQFDYLVYYDRRITGTLKYGSITSLKGIKVKRVLLWLDVDEIRVDLPPSDYIYFQVGWVNKKLDVGQFKTVHSCRDDGISCQGSWKDVLKVPTPPIRELPMLLTE 179
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00196 179 PANTHER T31J12.3 PROTEIN-RELATED 29 148 IPR007493 -
Eupl1g00196 179 Pfam Protein of unknown function, DUF538 36 143 IPR007493 -
Eupl1g00196 179 SUPERFAMILY At5g01610-like 13 150 IPR036758 -
Eupl1g00196 179 Gene3D - 22 151 IPR036758 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00196 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr1:6192825 Eupl5g00320 Eupl-Chr5:9387509 dispersed
Eupl Eupl-Chr1:6192825 Eupl5g00317 Eupl-Chr5:9374025 wgd