AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Fra11g02246 | ATGGGCTCGGTCAAAGAAACAAAACCGACACAACACGTGGCGTTAAAAGATAAGTTGATACCAACTGCTCAAAATCTCAGGATTTCAAAATCTACTGAAAGAACAGATTTTACTGAAAGTGGAAAAAGCAGTATGTGCAGAGGAAGCACAAGCACTGATCTAAGTGATGAAAGTAACTACAGCGCTTTTAGTAGCAACATCAGCAAACCTCATAAATCAAACGACTCGCGTTGGGAAGCAATTCAAGCTGTCAGATTGAAAGACGGAGTTTTGGGTCTGAACCATTTTAAATTGTTGAAAAGATTGGGTTGTGGTGATATTGGCAGTGTGTATCTATGTGAACTTAGTGGTACAAAATCCTACTTTGCAATGAAGGTAATGGATAAAGTGTCACTCGAGGGGCGTAACAAGCTATCGCGAGCTGAAACCGAAAGGGAAATACTTCAATGTCTGGATCACCCGTTTCTTCCTACTTTGTATACTCATTTTGAGACGGATAAGTTCTCGTGTTTGGTAATGGAGTTTTGCCCCGGAGGCGATTTACACATGTTGAGACAAAGGCAACCCGCGAAGCGGTTTTGTGAACAAGCTGTCAAGTTTTATGTAGCAGAGATACTTCTCGCCATGGAATACCTACACATGCTCGGGATCGTATACCGCGATCTAAAGCCCGAAAACGTCCTCGTTCGAGAAGACGGTCACATAATGCTAACAGACTTCGACCTCTCTCTCCGTTGCTCAGTCAACCCAACAATGGTGAACTCATCATCTGCAGACACCGAACCACTTCGCAAGAACTCGAACTACTGCATCGAACCCGCCTGCATCGAACCACCGTCGTGCATCGAACCATCATGCGTGGTTCCAACCTCCTGTTTCTCACCAAGATTCTTCAAATCAAAGAAAGACAAGAAACCCAAATCGGAAATCTGCAACCAAGTGACCCCATTGCCGGAGCTCATGGCTGAACCCACCGGAGTCCGATCAATGTCGTTCGTCGGAACCCATGAGTATTTAGCACCGGAGATCATCAAAAACGAAGGTCATGGTAGTGCAGTTGATTGGTGGACACTTGGGATATTCTTATACGAATTATTATTCGGTAAAACACCCTTTAAAGGGTCGAACAATCGGGCTACATTGACGAATGTCGTCGGTCAACCGTTGAGGTTCCCGGAGTCGCCGGCGGTGGGTTTTCCGGCGAGGGATTTGATCAGGGGTTTGTTGGTGAAAGACCCACGAAATCGATTGGGGTACAAAAGGGGTGCTACTGAAATCAAACAACATCCGTTTTTCGAAGGGGTTAATTGGGCGTTGATTCGTTGTGCAAGTCCGCCGGAGATTCCGAAAGCGGTGGTGGTTGATCGGAATATGCCGCCGGCGACTGGTGTTTTGGGGAAGAAGGGTGGCGGAGGTGTGGTTTCGCCGGAGAAGAAGGGGTCTCAGAGCTATTTGGAGTTTGATTTCTTTTGA | 1473 | 46.44 | MGSVKETKPTQHVALKDKLIPTAQNLRISKSTERTDFTESGKSSMCRGSTSTDLSDESNYSAFSSNISKPHKSNDSRWEAIQAVRLKDGVLGLNHFKLLKRLGCGDIGSVYLCELSGTKSYFAMKVMDKVSLEGRNKLSRAETEREILQCLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHMLRQRQPAKRFCEQAVKFYVAEILLAMEYLHMLGIVYRDLKPENVLVREDGHIMLTDFDLSLRCSVNPTMVNSSSADTEPLRKNSNYCIEPACIEPPSCIEPSCVVPTSCFSPRFFKSKKDKKPKSEICNQVTPLPELMAEPTGVRSMSFVGTHEYLAPEIIKNEGHGSAVDWWTLGIFLYELLFGKTPFKGSNNRATLTNVVGQPLRFPESPAVGFPARDLIRGLLVKDPRNRLGYKRGATEIKQHPFFEGVNWALIRCASPPEIPKAVVVDRNMPPATGVLGKKGGGGVVSPEKKGSQSYLEFDFF | 490 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Fra11g02246 | 490 | MobiDBLite | consensus disorder prediction | 30 | 58 | - | - | |
| Fra11g02246 | 490 | FunFam | Serine-threonine-protein kinase D6PK-like | 94 | 179 | - | - | |
| Fra11g02246 | 490 | CDD | STKc-phototropin-like | 95 | 450 | - | - | |
| Fra11g02246 | 490 | FunFam | serine-threonine-protein kinase D6PK-like | 180 | 247 | - | - | |
| Fra11g02246 | 490 | SMART | serkin-6 | 96 | 432 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Fra11g02246 | 490 | ProSiteProfiles | Protein kinase domain profile. | 96 | 432 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Fra11g02246 | 490 | FunFam | serine-threonine-protein kinase D6PK-like | 327 | 450 | - | - | |
| Fra11g02246 | 490 | Pfam | Protein kinase domain | 329 | 432 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Fra11g02246 | 490 | Pfam | Protein kinase domain | 97 | 249 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Fra11g02246 | 490 | ProSitePatterns | Serine-Threonine protein kinases active-site signature. | 217 | 229 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Fra11g02246 | 490 | SUPERFAMILY | Protein kinase-like (PK-like) | 68 | 453 | IPR011009 | - | |
| Fra11g02246 | 490 | Gene3D | Transferase(Phosphotransferase) domain 1 | 176 | 245 | - | - | |
| Fra11g02246 | 490 | MobiDBLite | consensus disorder prediction | 38 | 58 | - | - | |
| Fra11g02246 | 490 | Gene3D | Transferase(Phosphotransferase) domain 1 | 328 | 450 | - | - | |
| Fra11g02246 | 490 | Gene3D | Phosphorylase Kinase; domain 1 | 94 | 175 | - | - | |
| Fra11g02246 | 490 | PANTHER | FLIPPASE KINASE 1-RELATED | 27 | 451 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Fra11g02246 | K08286 | protein-serine/threonine kinase [EC:2.7.11.-] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Fra | Fra-Chr11:75683329 | Fra7g01704 | Fra-Chr7:74404687 | dispersed | |
| Fra | Fra-Chr10:56641449 | Fra11g02246 | Fra-Chr11:75683329 | transposed | |
| Fra | Fra-Chr16:42291769 | Fra11g02246 | Fra-Chr11:75683329 | transposed | |
| Fra | Fra-Chr2:68435715 | Fra11g02246 | Fra-Chr11:75683329 | transposed | |
| Fra | Fra-Chr4:38888147 | Fra11g02246 | Fra-Chr11:75683329 | transposed | |
| Fra | Fra-Chr6:66402154 | Fra11g02246 | Fra-Chr11:75683329 | transposed | |
| Fra | Fra-Chr11:75683329 | Fra8g01326 | Fra-Chr8:14248212 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Fra1g00462 | . | 11 | 373 | AGC Kinase gene family | AT3G25250 | 58.856 | 1.08e-146 | 420.0 | |
| Fra1g00564 | . | 11 | 373 | AGC Kinase gene family | AT3G25250 | 58.808 | 7.18e-146 | 418.0 | |
| Fra2g00510 | . | 135 | 233 | AGC Kinase gene family | AT5G58140 | 44.444 | 7.49e-21 | 95.5 | |
| Fra2g01537 | . | 24 | 538 | AGC Kinase gene family | AT4G14350 | 83.333 | 0.0 | 904.0 | |
| Fra2g01620 | . | 104 | 765 | AGC Kinase gene family | AT2G44830 | 67.113 | 0.0 | 856.0 | |
| Fra3g01001 | . | 3 | 182 | AGC Kinase gene family | AT3G44610 | 52.632 | 1.49e-43 | 149.0 | |
| Fra3g01074 | . | 13 | 404 | AGC Kinase gene family | AT1G51170 | 54.25 | 3.19e-143 | 410.0 | |
| Fra4g00342 | . | 85 | 586 | AGC Kinase gene family | AT5G47750 | 81.657 | 0.0 | 832.0 | |
| Fra5g00328 | . | 71 | 451 | AGC Kinase gene family | AT3G44610 | 57.18 | 9.07e-154 | 441.0 | |
| Fra5g00481 | . | 13 | 391 | AGC Kinase gene family | AT1G51170 | 57.256 | 5.44e-151 | 430.0 | |
| Fra5g00575 | . | 95 | 586 | AGC Kinase gene family | AT5G47750 | 67.068 | 0.0 | 651.0 | |
| Fra5g00602 | . | 3 | 499 | AGC Kinase gene family | AT5G40030 | 69.02 | 0.0 | 689.0 | |
| Fra6g00323 | . | 129 | 325 | AGC Kinase gene family | AT3G08730 | 23.318 | 4.51e-06 | 47.4 | |
| Fra6g00473 | . | 1 | 1295 | AGC Kinase gene family | AT3G17850 | 63.54 | 0.0 | 1539.0 | |
| Fra6g01130 | . | 10 | 469 | AGC Kinase gene family | AT3G14370 | 60.334 | 0.0 | 538.0 | |
| Fra6g01447 | . | 4 | 518 | AGC Kinase gene family | AT4G33080 | 77.606 | 0.0 | 824.0 | |
| Fra6g01658 | . | 9 | 525 | AGC Kinase gene family | AT2G26700 | 56.636 | 0.0 | 568.0 | |
| Fra7g00337 | . | 1 | 1294 | AGC Kinase gene family | AT3G17850 | 63.341 | 0.0 | 1514.0 | |
| Fra7g00876 | . | 111 | 555 | AGC Kinase gene family | AT1G79250 | 71.772 | 0.0 | 651.0 | |
| Fra7g00894 | . | 111 | 555 | AGC Kinase gene family | AT1G79250 | 71.335 | 0.0 | 653.0 | |
| Fra7g01490 | . | 70 | 910 | AGC Kinase gene family | AT5G58140 | 72.506 | 0.0 | 1265.0 | |
| Fra7g01491 | . | 118 | 910 | AGC Kinase gene family | AT5G58140 | 76.99 | 0.0 | 1275.0 | |
| Fra7g01704 | . | 98 | 586 | AGC Kinase gene family | AT5G47750 | 69.556 | 0.0 | 681.0 | |
| Fra7g01765 | . | 134 | 234 | AGC Kinase gene family | AT5G58140 | 44.545 | 4.15e-22 | 99.4 | |
| Fra7g02747 | . | 3 | 504 | AGC Kinase gene family | AT5G09890 | 76.389 | 0.0 | 820.0 | |
| Fra7g03079 | . | 28 | 459 | AGC Kinase gene family | AT3G08720 | 56.951 | 0.0 | 514.0 | |
| Fra8g00225 | . | 1 | 538 | AGC Kinase gene family | AT4G14350 | 82.56 | 0.0 | 908.0 | |
| Fra8g01983 | ACH | 135 | 259 | AGC Kinase gene family | AT5G58140 | 40.299 | 3.27e-21 | 96.7 | |
| Fra10g00885 | ACH | 135 | 233 | AGC Kinase gene family | AT5G58140 | 44.444 | 1.42e-22 | 93.2 | |
| Fra10g01148 | . | 5 | 373 | AGC Kinase gene family | AT3G25250 | 58.639 | 1.62e-152 | 436.0 | |
| Fra10g01581 | . | 73 | 765 | AGC Kinase gene family | AT2G44830 | 63.932 | 0.0 | 841.0 | |
| Fra11g00439 | . | 4 | 438 | AGC Kinase gene family | AT2G34650 | 61.207 | 0.0 | 520.0 | |
| Fra11g00764 | . | 201 | 517 | AGC Kinase gene family | AT2G20470 | 80.564 | 0.0 | 556.0 | |
| Fra11g00838 | . | 8 | 421 | AGC Kinase gene family | AT3G25250 | 59.524 | 3.76e-167 | 473.0 | |
| Fra11g02246 | . | 98 | 586 | AGC Kinase gene family | AT5G47750 | 72.617 | 0.0 | 725.0 | |
| Fra11g02541 | . | 12 | 449 | AGC Kinase gene family | AT3G14370 | 61.47 | 0.0 | 526.0 | |
| Fra12g00885 | . | 474 | 896 | AGC Kinase gene family | AT3G52890 | 66.667 | 0.0 | 585.0 | |
| Fra12g00886 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 64.378 | 0.0 | 543.0 | |
| Fra13g00061 | . | 18 | 996 | AGC Kinase gene family | AT3G45780 | 67.404 | 0.0 | 1317.0 | |
| Fra13g00899 | . | 371 | 934 | AGC Kinase gene family | AT3G52890 | 59.402 | 0.0 | 655.0 | |
| Fra14g01431 | . | 1 | 464 | AGC Kinase gene family | AT3G08720 | 66.242 | 0.0 | 624.0 | |
| Fra14g01581 | . | 4 | 491 | AGC Kinase gene family | AT5G04510 | 75.153 | 0.0 | 769.0 | |
| Fra15g01577 | . | 112 | 555 | AGC Kinase gene family | AT1G79250 | 71.053 | 0.0 | 654.0 | |
| Fra16g01034 | . | 90 | 586 | AGC Kinase gene family | AT5G47750 | 75.248 | 0.0 | 756.0 | |
| Fra16g01188 | . | 17 | 404 | AGC Kinase gene family | AT1G51170 | 56.566 | 2.39e-155 | 442.0 | |
| Fra16g01329 | ACH,WGDA | 119 | 346 | AGC Kinase gene family | AT3G08730 | 24.603 | 4.39e-08 | 54.3 | |
| Fra17g00013 | . | 135 | 409 | AGC Kinase gene family | AT3G08720 | 36.101 | 1.11e-45 | 170.0 | |
| Fra17g00655 | . | 2 | 373 | AGC Kinase gene family | AT3G25250 | 54.897 | 2.05e-135 | 392.0 | |
| Fra17g00720 | . | 1 | 519 | AGC Kinase gene family | AT2G20470 | 77.438 | 0.0 | 840.0 | |
| Fra18g00674 | ACH | 119 | 346 | AGC Kinase gene family | AT3G08730 | 23.32 | 5.98e-08 | 53.9 | |
| Fra18g00843 | . | 380 | 899 | AGC Kinase gene family | AT3G52890 | 62.764 | 0.0 | 645.0 | |
| Fra18g01283 | . | 18 | 996 | AGC Kinase gene family | AT3G45780 | 70.396 | 0.0 | 1374.0 | |
| Fra18g01700 | . | 1 | 468 | AGC Kinase gene family | AT3G08720 | 67.447 | 0.0 | 645.0 | |
| Fra10000240.1g00001 | . | 15 | 991 | AGC Kinase gene family | AT1G45160 | 48.749 | 0.0 | 913.0 | |
| Fra10000279.1g00007 | . | 395 | 991 | AGC Kinase gene family | AT1G45160 | 59.638 | 0.0 | 734.0 | |
| Fra10000365.1g00064 | . | 134 | 346 | AGC Kinase gene family | AT3G08730 | 22.979 | 1.34e-07 | 52.8 | |
| Fra10000072.1g00001 | . | 604 | 708 | AGC Kinase gene family | AT5G62310 | 66.981 | 9.44e-41 | 142.0 | |
| Fra10000072.1g00002 | . | 721 | 1159 | AGC Kinase gene family | AT5G62310 | 75.0 | 0.0 | 682.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Fra | Pkinase | 7.2e-37 | CL0016 | PK | AGC_RSK-2 |