AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro12g02181 ATGGCGTTTCCGATTTTTGATGGAAGTGTATGCCTATCAATCTGGACTCCTAATTCTAAGGAAAAGGACAGCAGTTCACCAACTTCGGATGATGTGAACAATGATATCATACCATCAGCATCCGTTCTAAAGCAATTGGTCATAGGTGTTGAGACCACAAAAGTTATAAAGTCAATGAAGGATTTGATGATATCATCAAGAGATTCTTCACCAGTGAAAGAGAGATCTGGTTTGAGCTTATCTGTCGTGAAGTCATTTGTAGTTGGGGAGAAAGAAGATAAGTTTGCTGCTGAGTTTGCTCGTGATGATAAAGTAATGTCCTTTATCTGTTCGCTCGTGGATCCAGAAGGACATCTTTCGAGAAGAAAAGCTAGATCTCATTTGGATATGACTACAATCATTACTAATTTTTCCAAAGAACTTCATGGTGCTCCTCCAGAAAGCTTTGTTCCAGAGCTTGCTGAAGCGATTGGAAGTTTAAAAACTTTGAAAAAAATGGCATTGTTTTGGTCTAGGGTTGTTGTTGAATTGAGAAGGCTATGGAGTGAAGGAAAACATATTCCTGGCATTCCACGGGATGAAATTCCAAATTTAAATTCCTGTCTATTGCATCAGCAGTTGCAGGTTATCAACTGCTGTATTTCTAGGAAACAGCGCCGCGCGATTGCCACTGAATCATTAAATTCTGTCTTAAAACAAGCCAATTGTAGTGCTAACATGCCACCTTCTTCTGGAGATATTTGTCCAGAAAACCCTCTTCTGTATGCTCGAGTTAGCTCTGGCGAACTTGTACTGCGATTAGGAGTTGACAAACGACTTGAAAACACAACACTGTTGGATACCAGTGAACCTGTATATATCCCTGTTATGCAGGAATGGCCTTTGCTCACAGAAGATGTTATCAAAGAAACAGAAGAATTTGTATTACGTACAGGGAGTGTTGGTGCAGGGTGCTCTCAACTTCTCTCTGATATGCAGGCTTTCAAGGCAGCAAATCCAGGGTGCATATTAGAAGATTTTGTAAGATGGCACTCCCCTCCTGATTGGACAGATGATGAAAGTAAAGAGATTAGTGATGGTGATATTTCTCCTTCGAGAGGACACCTGAGCACACGTATGCAGAAAGAAGGTAATTTATGGCGGGAACTTTGGGCAACCGCAAAACCAGTACCTGCTGTTAGACAGTCTCCATTATACTATGAGGATCTATCTGTTGAAGGGATTCTGCATGGACTGGAGAATTTGTCACCTTCTGCTTTGTTTGAACAGTTGTTTCTTTCTCTTCTCAGTTCAGGATGTGCAATTGCTGAGGCCAGAATCTCGAGTAATGAATTTCTGTACAAGATGTTTAAGGAGTGCAAAGACTATATTATTCTTATATGTCAAAGCAAAAGTTGGCTCCAGAAATCCCAAGATATATGCCAGGTGTATGAGACAATGACCCTGATGGCATTAGACCCTGACAAGTTTATAAGGCTGCTTAGCAATCCACAGCCTGATCAGACTCCTACGAAGAAGGAACTGAATAATCACCGGAGAACACCATCAAAGAACCAAAAAGACAACACAACTGCACAATCCTCGACAATGTTTTCAAGGAAGCCACCAAAGCCGATCCTCTGCTAA 1626 41.14 MAFPIFDGSVCLSIWTPNSKEKDSSSPTSDDVNNDIIPSASVLKQLVIGVETTKVIKSMKDLMISSRDSSPVKERSGLSLSVVKSFVVGEKEDKFAAEFARDDKVMSFICSLVDPEGHLSRRKARSHLDMTTIITNFSKELHGAPPESFVPELAEAIGSLKTLKKMALFWSRVVVELRRLWSEGKHIPGIPRDEIPNLNSCLLHQQLQVINCCISRKQRRAIATESLNSVLKQANCSANMPPSSGDICPENPLLYARVSSGELVLRLGVDKRLENTTLLDTSEPVYIPVMQEWPLLTEDVIKETEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDWTDDESKEISDGDISPSRGHLSTRMQKEGNLWRELWATAKPVPAVRQSPLYYEDLSVEGILHGLENLSPSALFEQLFLSLLSSGCAIAEARISSNEFLYKMFKECKDYIILICQSKSWLQKSQDICQVYETMTLMALDPDKFIRLLSNPQPDQTPTKKELNNHRRTPSKNQKDNTTAQSSTMFSRKPPKPILC 541
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro12g02181 541 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 31 522 IPR045700 GO:0005096(InterPro)|GO:0005096(PANTHER)|GO:0043547(PANTHER)|GO:0043547(InterPro)
Fro12g02181 541 MobiDBLite consensus disorder prediction 495 541 - -
Fro12g02181 541 Pfam Rab3 GTPase-activating protein catalytic subunit 266 413 IPR026147 -
Fro12g02181 541 MobiDBLite consensus disorder prediction 519 533 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro12g02181 K18270 Rab3 GTPase-activating protein catalytic subunit
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
92673 Fro12g02181 Fro16g00235
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr12:29237148 Fro16g00235 Fro-Chr16:2671502 wgd
Fro Fro-Chr12:29237148 Fro2g01342 Fro-Chr2:16698983 wgd