Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Fro14g01321	ATGTCGTTTAAGTGTATGATTCAGGATATGAAGGGGGATTTCGGGAGCATTTCTAGGAAAGGGTTTGGGTTGAGGTCGAGGTCTCAGAGAGTGGTGGAGGATAGATCTCTGGTGGTGGTTGATGCGTTGAAGCAGAGCTGTTGGGCGAACATGCCGCCGGAGCTGCTGCGTGATGTGTTGATGAGGATTGAGGCGTCGGAGTGCGTGTGGCCTCTTCGGAAGAATGTGGTTTGTTGTGCTGGTGTCTGCAGGAATTGGAGGGAGATTATGAAAGATATTGTTAAAAATCCTGAGTTTTCGGGCAAATTGACTTTCCCCATTTCGCTGAAGCAGCCTGGTCCAAGGGGCTCTCTAATACAATGCTATATAAAGCGGAACCGAAGCGCTCAAACATATCATCTCTACCTTAGTTTAAATCAAGCGTCAAACGATGATGGGAAGTTTCTTCTTGCTGCAAAGAAATGTAGACGTGCTACATGCACAGATTATATAATCTCTTTAAATTCAGAAGATGTGTCAAAAGGCAGCAGCACATACATAGGAAAGTTAAGATCAAATTTCCTTGGAACTAAGTTCACTGTATATGATGCCCAACCTCCAAATGGTGGAGCTTTGACTACAAAATGTCGTTCCTTAAGGCCCGGGAGTATGAAACGAGTGTCACCTAGGATTCCTGCTGGAAACTACCCGGTTTCCAACATTTCATATGAACTTAATGTCTTGGGGTCCAGGGGGCCAAGAAGGATGCAATGTATAATGAATGCAATTCCTGCAAGTGCTATGGACCCAGGGGGAGTGGCTCCAACTCAGACCGAATTCCTCGTCAGCAATGTGGATTCATTTTCATCTCTGCCTTTTTTCAGATCAAAATCTGCACGTATTGATAATTTCCAATCTGGATCATCATTGACTGGTCAAAATGACTCGATGCTGATGTTGAAGAATAAGGCGCCTAGGTGGCATGAACAACTTCAATGCTGGTGCCTGAATTTCAATGGGCGAGTGACTGTTGCTTTGTTGTGCACAAATGTTTATACAGTTTGGAAAAGTTGCTTCACAATGGATTATCAGGCGTTTGCTATTTGTCTTAGCAGCTTTGACACCAAAATTGCTTGTGAATGA	1122	44.12	MSFKCMIQDMKGDFGSISRKGFGLRSRSQRVVEDRSLVVVDALKQSCWANMPPELLRDVLMRIEASECVWPLRKNVVCCAGVCRNWREIMKDIVKNPEFSGKLTFPISLKQPGPRGSLIQCYIKRNRSAQTYHLYLSLNQASNDDGKFLLAAKKCRRATCTDYIISLNSEDVSKGSSTYIGKLRSNFLGTKFTVYDAQPPNGGALTTKCRSLRPGSMKRVSPRIPAGNYPVSNISYELNVLGSRGPRRMQCIMNAIPASAMDPGGVAPTQTEFLVSNVDSFSSLPFFRSKSARIDNFQSGSSLTGQNDSMLMLKNKAPRWHEQLQCWCLNFNGRVTVALLCTNVYTVWKSCFTMDYQAFAICLSSFDTKIACE	373

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Fro14g01321	373	ProSitePatterns	Tub family signature 2.	358	373	IPR018066	-
	Fro14g01321	373	SUPERFAMILY	Tubby C-terminal domain-like	97	373	IPR025659	-
	Fro14g01321	373	PANTHER	TUBBY-RELATED	44	372	-	-
	Fro14g01321	373	Gene3D	Tubby Protein; Chain A	106	373	IPR025659	-
	Fro14g01321	373	CDD	F-box-AtTLP-like	48	92	-	-
	Fro14g01321	373	Pfam	F-box domain	48	92	IPR001810	GO:0005515(InterPro)
	Fro14g01321	373	SUPERFAMILY	F-box domain	42	92	IPR036047	GO:0005515(InterPro)
	Fro14g01321	373	Pfam	Tub family	109	338	IPR000007	-
	Fro14g01321	373	PRINTS	Tubby superfamily signature	179	203	IPR000007	-
	Fro14g01321	373	PRINTS	Tubby superfamily signature	331	347	IPR000007	-
	Fro14g01321	373	PRINTS	Tubby superfamily signature	313	330	IPR000007	-
	Fro14g01321	373	PRINTS	Tubby superfamily signature	163	179	IPR000007	-
	Fro14g01321	373	PRINTS	Tubby superfamily signature	228	255	IPR000007	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Fro14g01321	K19600	tubby and related proteins

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Fro	Fro-Chr14:20989081	Fro6g00690	Fro-Chr6:8850006	dispersed
	Fro	Fro-Chr14:20989081	Fro16g01499	Fro-Chr16:24589460	transposed

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Fro2g01410	.	1	379	TUB Transcription Factor family	AT1G53320	64.615	0.0	506.0
	Fro3g00961	.	1	445	TUB Transcription Factor family	AT1G25280	63.938	1.51e-178	502.0
	Fro4g00574	.	40	379	TUB Transcription Factor family	AT1G53320	72.059	0.0	508.0
	Fro5g00539	ACH	1	393	TUB Transcription Factor family	AT2G18280	57.895	8.77e-172	484.0
	Fro6g00690	WGDA	39	406	TUB Transcription Factor family	AT2G47900	67.751	1.69e-176	495.0
	Fro8g01374	ACH	1	393	TUB Transcription Factor family	AT2G18280	59.953	3.72e-175	492.0
	Fro9g00914	.	1	445	TUB Transcription Factor family	AT1G25280	74.67	0.0	619.0
	Fro11g00226	.	12	397	TUB Transcription Factor family	AT1G16070	52.591	1.34e-145	417.0
	Fro12g01978	.	1	445	TUB Transcription Factor family	AT1G25280	75.556	0.0	630.0
	Fro14g01321	.	1	406	TUB Transcription Factor family	AT2G47900	70.025	0.0	535.0
	Fro16g01499	WGDA	30	406	TUB Transcription Factor family	AT2G47900	68.299	0.0	525.0
	Fro17g01223	.	14	413	TUB Transcription Factor family	AT1G47270	54.455	1.23e-148	425.0
	Fro18g00591	.	1	445	TUB Transcription Factor family	AT1G25280	66.667	0.0	554.0

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	Fro	Tub	1.3e-73	CL0395		TF	TUB