AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso10g02384 ATGGAGGATGAGTATGCCAAACTTATCAGGAGGATGAATCCACCCAGAGTTACAATCGACAACGATTCGTCCTCAGATGCAACAGTTATCCAGGTTGAAAGTGTTAATAAGCATGGTAGTCTGCTGGAAGTTGTCCAAGTTCTTGCGGATTTAGATCTCGTTGTAAAAAAAGCTTATATTTCATCAGATGCTGGATGGTTCATGGATGTGTTTAATGTTATATGCAATGACGGAAGCAAAATTAGAGATGATGGGGTAGTCAGTTATATAAAACAGGTGCTTGAAAGTGATGCATTTTACGTACCATCACTGAATGGTTCAGTTGGATTGAAGCCATCGGATGATTACACCGTAATAGAACTAGTTGGAACAGACAGACCTGGATTATTATCTGAAGTGTCTGCAGTTCTAACAAACCTTGGTTGTAATGTGCTCAATGCTGAAATATGGACTCACAATGCCAGAGCTGCAGCTGTGGTACATGTCACGGATGATAAAACAAAGTGTGCAGTTGAAGACCCAAAGCGGCTCTTGACTATTAAGAAGCTTCTTTGTAACGTTCTCAAGGGAAACAATGATTTGAAGACTGCAAAAATGACACTTTCCACCCCTGGTTCCATGCACAGACAGAGAAGATTACATCAAATTATGTTTGCTGAGAGGGATTACGAGAAAGTTGAAGAAACAGAACCAGAAAAGGAAAATAAGTTGAGAACACATATTACGGTTTTAGATTGTGTTGAGAAGGATTACACAGTTGTTACTATGCATTGTAGGGATAGACCAAAGCTGTTGTTTGATATTATTTGCACTCTTACCGACATGGAATATGTAGTCTTTCATGGAGTGGTTCACACAGATAAAACGGAGGCTTTTCAGGAATATTACATTCGGCATGTTGATGGGAGTCCAGTAAGCTCAGAGGCAGAGCGAGAGCGTGTTATGCAATGTCTTGAAGCTGCAATTGAGAGGAGGACATCTGAGGCGCTAGAGCTAGAATTGTGCACAACAGATCGTGTTGGACTTCTTTCAGATATAACCAGAATCTTTAGAGAAAATAGTTTGTGTATAAAAAGAGCAGAGATTTCAACCGAAGGTGGAACAGCTAAAGACAAGTTTTACGTGACTGACATGACCGGTAACTACCCTGTTGATCCAATAACCATAGATTCTATTCGAAGACAAATCGGTCAACAAGCAGCACTTCATGTTAGATGGAATCCTACTCAAACATCAGACTCACGACCTGAAGAAACAACAATGGGCTTTCTCTTTGGAAGTCTGTTTAGAGGCCGAACGTTTCAGACTTTGAAATTAGTCGGCTCCTATTCCTGA 1335 40.52 MEDEYAKLIRRMNPPRVTIDNDSSSDATVIQVESVNKHGSLLEVVQVLADLDLVVKKAYISSDAGWFMDVFNVICNDGSKIRDDGVVSYIKQVLESDAFYVPSLNGSVGLKPSDDYTVIELVGTDRPGLLSEVSAVLTNLGCNVLNAEIWTHNARAAAVVHVTDDKTKCAVEDPKRLLTIKKLLCNVLKGNNDLKTAKMTLSTPGSMHRQRRLHQIMFAERDYEKVEETEPEKENKLRTHITVLDCVEKDYTVVTMHCRDRPKLLFDIICTLTDMEYVVFHGVVHTDKTEAFQEYYIRHVDGSPVSSEAERERVMQCLEAAIERRTSEALELELCTTDRVGLLSDITRIFRENSLCIKRAEISTEGGTAKDKFYVTDMTGNYPVDPITIDSIRRQIGQQAALHVRWNPTQTSDSRPEETTMGFLFGSLFRGRTFQTLKLVGSYS 444
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso10g02384 444 Pfam ACT domain 117 166 IPR002912 -
Fso10g02384 444 SUPERFAMILY ACT-like 326 400 IPR045865 -
Fso10g02384 444 Gene3D - 114 184 - -
Fso10g02384 444 ProSiteProfiles ACT domain profile. 118 199 IPR002912 -
Fso10g02384 444 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 7 406 IPR040217 -
Fso10g02384 444 CDD ACT-ACR-3 251 325 - -
Fso10g02384 444 ProSiteProfiles ACT domain profile. 331 412 IPR002912 -
Fso10g02384 444 SUPERFAMILY ACT-like 24 93 IPR045865 -
Fso10g02384 444 ProSiteProfiles ACT domain profile. 29 107 IPR002912 -
Fso10g02384 444 SUPERFAMILY ACT-like 113 173 IPR045865 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso10g02384 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
94546 Fso10g02384 Fso10g02752
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr10:65854504 Fso14g00540 Fso-Chr14:7151066 dispersed
Fso Fso-Chr7:4256646 Fso10g02384 Fso-Chr10:65854504 transposed
Fso Fso-Chr8:48202651 Fso10g02384 Fso-Chr10:65854504 transposed
Fso Fso-Chr10:65854504 Fso10g02752 Fso-Chr10:70151849 wgd
Fso Fso-Chr10:65854504 Fso8g02111 Fso-Chr8:51509801 wgd