AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00197 ATGGCGATCGCCGTCGCATCTTGCTGGATTAATGCGTTCGCCTCCGCCGGAGCTTCTCGCTCTTCACTCTCCTCTCAACGTCTCTTCTCCTCGCCGCCAATTTCAGCTACTCGTTTAGTCATTCCGAAAGCTACGAGTAAGCGTCAAAATCCGAAGAGAAATCAGAAGGAGAGTGCTCGTAAATCATCACCGGAGAAAGAAGCTAATATTCAAAAGCTTTCAAGAAGATCAAGAGATGAAAAGTATTCAAATGCTGATGATTACAGTGATACAAAAAGTGCAGAACAACAACCTCAGTCAACCGCCTTCAAGTCGTTTGGTACACAGAGAAAAAACGCCAAAGGCTTTATGGGTAACTTGAAGGACCAACAGGGCGAGACTACTAAAATTCAAGATGCTTCTTTTCTTAATGCTGTTGTGAAGGTTTATTGTACTCATACTGCACCTGATTATTCCCTCCCTTGGCAAAAGCAAAGACAATATACAAGTACAGGAAGTGCTTTCATGATTGGTGATGGAAAGCTTTTGACAAATGCTCATTGTGTTGAACATAACACACAAGTTAAAGTCAAGAGAAGGGGAGATGATACCAAGTATGTGGCTAAGGTTTTAGCTAAAGGCATGGAATGTGACATAGCTTTGCTCTCAGTGGAAAATGAGAAATTCTGGAAAGGAGCCGAGCCACTTCAGTTCGGCCATTTGCCTCGTCTTCAGGATCCAGTTACTGTTGTAGGGTATCCACTTGGAGGGGACACCATTTCAGTGACCAAAGGAGTTGTATCTCGAATAGAGGTCACCTCCTATGCTCATGGATCAGCTGAACTGTTGGGCATTCAGATTGATGCAGCAATTAATCCTGGTAATAGTGGTGGCCCTGCTTTCAATGATCAGGGAGAATGCATCGGTGTCGCATTTCAGGTGTACAGGTCAGATGATACTGAAAACATTGGGTATGTAATTCCAACAACTGTCGTGTCTCATTTCCTAGATGATTATGAGAGAAACGAGAAGTACACAGGTTTCCCTTCCCTTGGAATATTATTGCAAAAGTTAGAGAATCCAGCTTTACGTGCCTGCTTAAAAGTGCCATCTAACGAGGGTGTACTTGTCCGTCGTGTGGAGCCCACTTCTGGTGCCAGTAATGTCTTGAAGGAGGGGGATGTAATTGTAAGCTTCGATGGTGTAGAAGTCGGATCAGAAGGGACAGTCCCATTTCGATCAACCGAACGCATTGCATTCCGCTACCTCATTAGTCAAAAATTTACAGGGGATATAGCAGAAGTTGGTATCATCAGATCAGGGGCTTTCATGAAAGTTCACACTGCTATGAATCCACGTGTTCATTTGGTACCGTATCATATTGAAGGGGGTCAGCCATCATACTTGATAGTAGCTGGCTTAGTTTTTACCCCTCTGTCAGAACCACTAATAGATGAGGAATGTGAAGACAGCATAGGGTTAAAATTATTGACAAAGGCACGGTATTCCATGGCGAGGTTCAAAGGAGAACAAATTGTGATTTTATCACAGGTATTGGCAAATGAAGTTAACATCGGGTATGAGGATATGAGCAATGAGCAGGTTCTGAAGTTCAATGGAACTCGAATAAAGAACATTCATCATCTTGCTCATCTTGTTGATTCCTGCACAGACAAATACTTGGTTTTCGAATTTGAGGACAATTATCTTGCTGTGTTAGATCGAGAGGCTTCATCGGCCGCCTCACCCTGCATTCTTAAAGATTACGGCATCCCGTCAGAGAGGTCTTCTGATCTTCTAGAACCATACGTGGACCCCGTTGGTGAAAACCAAGTAATCGAACATCACGATCTTGGTGACAGTCCTGTCACAAATTCAGATTTCGGGTCTGATGGACTTCAATGGGCTTGA 1890 43.54 MAIAVASCWINAFASAGASRSSLSSQRLFSSPPISATRLVIPKATSKRQNPKRNQKESARKSSPEKEANIQKLSRRSRDEKYSNADDYSDTKSAEQQPQSTAFKSFGTQRKNAKGFMGNLKDQQGETTKIQDASFLNAVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGDGKLLTNAHCVEHNTQVKVKRRGDDTKYVAKVLAKGMECDIALLSVENEKFWKGAEPLQFGHLPRLQDPVTVVGYPLGGDTISVTKGVVSRIEVTSYAHGSAELLGIQIDAAINPGNSGGPAFNDQGECIGVAFQVYRSDDTENIGYVIPTTVVSHFLDDYERNEKYTGFPSLGILLQKLENPALRACLKVPSNEGVLVRRVEPTSGASNVLKEGDVIVSFDGVEVGSEGTVPFRSTERIAFRYLISQKFTGDIAEVGIIRSGAFMKVHTAMNPRVHLVPYHIEGGQPSYLIVAGLVFTPLSEPLIDEECEDSIGLKLLTKARYSMARFKGEQIVILSQVLANEVNIGYEDMSNEQVLKFNGTRIKNIHHLAHLVDSCTDKYLVFEFEDNYLAVLDREASSAASPCILKDYGIPSERSSDLLEPYVDPVGENQVIEHHDLGDSPVTNSDFGSDGLQWA 629
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00197 629 Gene3D - 120 223 IPR043504 -
Hean1g00197 629 Pfam Trypsin-like peptidase domain 165 303 - -
Hean1g00197 629 PRINTS HtrA-DegQ protease family signature 195 215 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Hean1g00197 629 PRINTS HtrA-DegQ protease family signature 382 394 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Hean1g00197 629 PRINTS HtrA-DegQ protease family signature 274 291 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Hean1g00197 629 PRINTS HtrA-DegQ protease family signature 173 185 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Hean1g00197 629 Gene3D - 345 441 IPR036034 GO:0005515(InterPro)
Hean1g00197 629 MobiDBLite consensus disorder prediction 89 104 - -
Hean1g00197 629 CDD PDZ-serine-protease 342 439 - -
Hean1g00197 629 MobiDBLite consensus disorder prediction 50 88 - -
Hean1g00197 629 SUPERFAMILY Trypsin-like serine proteases 135 337 IPR009003 -
Hean1g00197 629 PANTHER - 46 596 - GO:0004252(PANTHER)
Hean1g00197 629 FunFam protease Do-like 9 224 334 - -
Hean1g00197 629 ProSiteProfiles PDZ domain profile. 329 397 IPR001478 GO:0005515(InterPro)
Hean1g00197 629 Pfam PDZ domain 450 591 IPR041517 -
Hean1g00197 629 MobiDBLite consensus disorder prediction 608 629 - -
Hean1g00197 629 SUPERFAMILY PDZ domain-like 365 444 IPR036034 GO:0005515(InterPro)
Hean1g00197 629 Gene3D - 447 598 IPR046449 -
Hean1g00197 629 MobiDBLite consensus disorder prediction 35 104 - -
Hean1g00197 629 Gene3D - 234 344 IPR043504 -
Hean1g00197 629 FunFam Protease Do-like 9 120 222 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00197 K25896 protease Do-like 2, chloroplastic [EC:3.4.21.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:5098449 Hean5g03079 Hean-Chr5:162793791 dispersed