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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00235 ATGAGAAAGTTATGTGACATCAACATGTACACCATGATCCATTATAGCGTTTTCATCTTCTTCTTTGGAGGATTAGCAACTATTAGCTTTTATAGAAACAACACTAGTCAAGGAGTTGCAAGTAACACCTTTAATGTTACTCCAACAATTGCAAGCACCTGCGATTTGTTCTCCGGCAGATGGGTTCATGATAACAAGAGTCATTACCCTTTGTACGAAGAACACGAGTGCCCTTATCTCGACAAAAGTTACGCTTGCCAAACTTATGGCAGAAAGGATTTCAAGTATCTGCAATGGAGGTGGCAACCCCATGACTGTGACTTCCCTAGGTTTGATGAGAAAGCAATAGTAGAGAGATTAAGGGGTAAAAGGCTAATGTTTGTGGGGGATTCACTAGTTAGAAATCAATGGAATTCAATGATTTGCATGCTCTATACATCTATCCCAGGGGTCAAGAGGATTGGTGGAGAACTTATTGGTTCCTTACGCACTTTTCGGTTCACTGACTACAATATCTCAATTGATTTCTACTGGGCTCCGATGCTAGTCGAATCTAATGGCGATAGCCCAACGAACCATCTCACTGCTTTTAGAATTGTTCGAATCAAATCCATTGAAAAACATGCAAGACATTGGGTTAATTCGGATATACTTATCTTTAATTCCTATCGTTGGTGGCGATCACACGTAGTGAACTTCTTAAAGAGCGGTGGATCATTGTTGGATGACCTTAATAACGTGTATGAAGAAGTTAACATGGTTCGTGCCTACTGGGTCTCAAAACGTGGTCTAATTGGGCACATACCCATATAG 813 40.59 MRKLCDINMYTMIHYSVFIFFFGGLATISFYRNNTSQGVASNTFNVTPTIASTCDLFSGRWVHDNKSHYPLYEEHECPYLDKSYACQTYGRKDFKYLQWRWQPHDCDFPRFDEKAIVERLRGKRLMFVGDSLVRNQWNSMICMLYTSIPGVKRIGGELIGSLRTFRFTDYNISIDFYWAPMLVESNGDSPTNHLTAFRIVRIKSIEKHARHWVNSDILIFNSYRWWRSHVVNFLKSGGSLLDDLNNVYEEVNMVRAYWVSKRGLIGHIPI 270
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00235 270 Pfam GDSL-SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 109 258 IPR026057 GO:0016740(InterPro)
Hean1g00235 270 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 28 258 IPR029962 GO:0005794(PANTHER)|GO:0016413(PANTHER)|GO:0016413(InterPro)
Hean1g00235 270 Pfam PMR5 N terminal Domain 53 107 IPR025846 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00235 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:6271283 Hean9g01718 Hean-Chr9:102794752 dispersed
Hean Hean-Chr1:6271283 Hean1g00237 Hean-Chr1:6278652 proximal
Hean Hean-Chr1:6271283 Hean10g00529 Hean-Chr10:19422726 wgd