AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca3g02887 ATGGCGACACCTACATACCTATGTGGATCTAAGACCCCGTGTTATTTCTCCAAAAGCGCTTCGTCGTTCTCCCGATCCATGTGTTCACAGCAGCAAAAGCTCAATTTTGCTTCATTTGGTGGAGCATGTAGAGTGGTTCAATGTCCAACTCAAGGCAGGGGAAGAGGTGTGAGGGTTGTTTGTAATGTACAAAAGGTAGAGGTCCTCACCAGAAGTGAACCCGAAAGTCAAGCTTCAGAAGGATTAAGCAACCAGCTATCATGTGTGATGAAGTTTGGTGGATCATCTGTGGCCTCAGCAGAAAGGATGAAGGAAGTTGCTGACCTAATCCTCAGCTTCCCAGAAGAGAGCCCTGTCATTGTTCTTTCTGCCATGGGCAAGACCACCAACAAGCTTATATCGGCAGGAGAGAAGGCTGCAAGTTGTGTTTCCATTGTGTCTGAAATCGATGAATTGGCCTTTTTGAAAGAACTCCATTATAGAACAGTGGAAGAGCTTGGATTAGAAAAAACACTCATTGAGGACCACTTAGAAAAACTGGAGCGACTTCTGAATGGGATTTCTGTACTGAAAGAGTTCACACCACGTGCAAGGGACTACCTAGTCTCATTTGGGGAATGTATGTCCACAAGGATATTCTCTGCATACTTGAATAAAATCGGTGTCAAAGCACGCCAGTATGATGCGTTTGATATTGGGTTCATTACAACAGATGACTTTACTAATGCGGATATTCTGGAAGCAACTTATCCAGCTGTAGCCAAAAGACTAAATGGTGATTGGATTAGGGATCCCGCAATCCCTATTGTCACTGGTTTCCTTGGAAAGGGTTGGAGAACATGTGCTGTGACCACATTGGGTAGAGGTGGTAGTGATTTGACTGCCACAACCATTGGTAAAGCACTTGGTTTGCGAGAAATTCAGGTATGGAAAGATGTGGATGGTGTGTTGACATGTGACCCTAATATATATTCGGGTGCAGAACCTGTCCCATATTTGACTTTCGATGAGGCAGCTGAACTTGCATATTTTGGTGCTCAGGTCCTTCATCCACAGTCTATGAGGCCTGCAAGAGAGGGTGATATACCTGTTAGGGTTAAAAATTCTTACAACCCTAATGCACCTGGTACCTTAATCACTAAGTCACGAGATATGAGTAAGGCAGTACTTACCAGCATTGTTTTGAAACGTAACGTGACAATGTTAGATATTGTTAGCACTCGCATGCTTGGTCAATTTGGATTCCTTGCCAAGGTGTTTTCAATTTTTGAAGATTTGGGTATATCAGTGGATGTTGTGGCTACAAGTGAAGTTAGCATTTCCTTGACATTAGATCCTTCAAAGCTTTGGAGCAGGGAGCTGATTCAGCAGGCAAGCGAACTTGATCATGTTGTGGAAGAACTTGAAAAAATTGCTAAAGTCAATCTCCTTCAACACAGATCCATTATTTCACTTATTGGAAATGTTCAAAGATCCTCACTCGTATTGGAAAAGGCGTTTCGTGTTCTTCGTATGAATGGAGTGAATGTTCAAATGATATCGCAAGGAGCATCAAAGGTGAATATATCACTCATAGTCAATGATAGTGAAGCAGAAAAATGTGTGAAAGCTTTGCATTCCGCCTTCTTTGAGAATGATATGTCCGACATCGATTGA 1656 42.63 MATPTYLCGSKTPCYFSKSASSFSRSMCSQQQKLNFASFGGACRVVQCPTQGRGRGVRVVCNVQKVEVLTRSEPESQASEGLSNQLSCVMKFGGSSVASAERMKEVADLILSFPEESPVIVLSAMGKTTNKLISAGEKAASCVSIVSEIDELAFLKELHYRTVEELGLEKTLIEDHLEKLERLLNGISVLKEFTPRARDYLVSFGECMSTRIFSAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLNGDWIRDPAIPIVTGFLGKGWRTCAVTTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPNIYSGAEPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLITKSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQASELDHVVEELEKIAKVNLLQHRSIISLIGNVQRSSLVLEKAFRVLRMNGVNVQMISQGASKVNISLIVNDSEAEKCVKALHSAFFENDMSDID 551
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca3g02887 551 Gene3D - 89 379 IPR036393 -
Laca3g02887 551 SUPERFAMILY ACT-like 471 546 IPR045865 -
Laca3g02887 551 SUPERFAMILY Carbamate kinase-like 89 382 IPR036393 -
Laca3g02887 551 Coils Coil 163 183 - -
Laca3g02887 551 CDD AAK-AK-LysC-like 88 380 IPR041746 -
Laca3g02887 551 SUPERFAMILY ACT-like 388 488 IPR045865 -
Laca3g02887 551 ProSitePatterns Aspartokinase signature. 89 97 IPR018042 GO:0004072(InterPro)|GO:0008652(InterPro)
Laca3g02887 551 Pfam Amino acid kinase family 88 368 IPR001048 -
Laca3g02887 551 NCBIfam aspartate kinase 89 544 IPR001341 GO:0004072(InterPro)|GO:0008652(InterPro)
Laca3g02887 551 Gene3D Aspartokinase, catalytic domain 126 221 IPR042199 -
Laca3g02887 551 FunFam Aspartokinase 400 473 - -
Laca3g02887 551 FunFam Aspartokinase 126 221 - -
Laca3g02887 551 Gene3D - 400 477 - -
Laca3g02887 551 ProSiteProfiles ACT domain profile. 404 484 IPR002912 -
Laca3g02887 551 PANTHER ASPARTATE KINASE 85 544 - GO:0004072(PANTHER)|GO:0005829(PANTHER)|GO:0009089(PANTHER)|GO:0009090(PANTHER)|GO:0009570(PANTHER)
Laca3g02887 551 FunFam Aspartokinase 1 474 543 - -
Laca3g02887 551 Coils Coil 451 471 - -
Laca3g02887 551 Gene3D - 391 543 - -
Laca3g02887 551 Pfam ACT domain 483 542 IPR054352 -
Laca3g02887 551 FunFam Aspartokinase 192 379 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca3g02887 K00928 aspartate kinase [EC:2.7.2.4]
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Event-related genes

Select Gene_1 Gene_2 Event_name
114606 Laca2g02465 Laca3g02887
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr2:128411289 Laca3g02887 Laca-Chr3:123444376 dispersed
Laca Laca-Chr3:123444376 Laca4g03107 Laca-Chr4:145903835 dispersed