Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi2g04203 | ATGGAATTTAAATCGCGTGATTACAAAGCTGAAGAAGAAGCATATTCAGTCACTCGTGTTTCAGTTTCTTCACATCCTCTATGTTCATCTCCATCTCCATCTTCATCAGCACATACACAGGATGATGGGAATTTTGAATTCTCTGATCCGTTAAGGGGGATGTCAATGGAAATCAAGGAGCACGTTGAAGATACCGCTGTCCCAGAAAAGCGTCATGTTCGTCAAGCCACTTCTCATATCTCTGCAAAAGAATGGGTATCTTTTAATAAGCTGTTAATGCAGAGATTTCCCGTGCCAAAAATGATTTCGGTTTCTTCGGTGTCGAGCAAAACGATAAAGGGCAAGAAAGTAACTGGAGAACTACCAGCAAATGTGCAGTCAGATGAACTGAATGAATCTCAAAAGTTGACTGAAGGAGGGTTTAAGATTGTAAGCCAGCAGGAGTATATCAAACGATTGCATGAACTTAAAGACGAGATCATGCGTGCTTGGGGTTCTGATGATCGTGTGACATCTTTAAAGTTGTCTATTAAGGTTGCTAGGCTTCTGATGGACACCTCCGTGGCACATTTTTATCCAACGTTATTTGTTCTAGCTACTGATATAATGGAAATGCTAGGTGACATGGTATGGGAGCGGATTAAGGAGAAAGCCGAGTTTGCAGATGACGGGACCAAAATATGCACTCTATCAGATGACTTTAAAGCAAATAATGTATGCCTTGAAGCCAAAGAGACATGCAGTAACTGGTTCCGAAAAATTGCTTCCATCCATGAGCTTCTTCCACGCATCTATCTTGAGCTTGCAATATTCCCATGCTGGCGGTTCCTTCATGATAATGCCGTGGATAACCTCATGCGTTTAGTGATGATGATAAGAGGGATTGCAGATCCACTGGCATCAGCATACAGCCTCTTCTTTTTGCTTCACTGTGCCCAGAAAATTCCTCAACATGATACAGGGCATCTGATAGCTTGCATTAATGACCAAAAAGTTGTATTTGCACGGATTGTATCTATGAAAGAAACCAAGTATGGGAACTTTTTGGGAGATAGAAGATTACTTATTAGCCTGATGGAACCAACGATTGAATATGCTATGAGATGTATATTTAGAGATCCAGACCAAGTTGCTGATATGATTGTGAGACTTGATTTAGGAAAGTATCCATTAGAGTTAAATGGAAAAGTTCCTTGGATATCAGTTATCCTCCATTATCTACTTAAGGAACTTCCAGTTGAAGTAGTATGTGCCAATGCTGTTGAAATTCTTCGCCTTGTTGACTGCAGCCACGATTGTTCCTTTGATCAGTGTTTGAATTACAAGATGCTTGGGTTAAAGCTTTGTGAGGGAATATCTCGGGTGAATGCAGTTGATGCAGTAATTGATGAAGTAATGCAGGTTGCAACCCAAAGGAAGAGCTTTGATGAGTACTTGAAGATCTTGGACTCTTATATGGATATTATTCTTCAGTATAAGATGGATCTATATCTAAGCTCCTCTCTGAGTGAAATATTTGAGAGATTGTGCAATGAAGTGGTTACTGAAAATGAACTTGCTAGCCTACAATCAATTGTTGTAAAGCTGGTCACACATTTCGATAATATGCAATATGTTTTTGATCTGAACTATTTTGTTGACATATTGGATGTCATGCACGGTAGCTCAAGAAGCATTGTGAGTATGCACATCCTTACTATCGCCACAAGAAATGATCGCATTTATGATCCTACCACAGTGAAACTGCTATTTGATGTTGCCCAGTCTCTGCATGACAGTGTTGATTTCTCAAGCACAAAACAGGATGATAATCAACAGGCTGAGCGTTTAATTGCTCGTTTTATTGATAAGGTTGACCATGGTACAGATTTGGATCGCCATTTGACATTCTTAGTTGAGTGTCGTGGAGCTTTCAGCAGTATGAATGATCTGAAGGAGATCCTTGTTCATTCGAGCAATCTTTTAGCAACCAGAGCTTTGAGAGCGAAAAAAGAAAATTTGAGTTTTGTTAAATCTTGCATCACTTTTAATGAAGTTACAGTACCATGTATTCCATCTCATTCCAGGCAGTTAATCTTATACCTTGAAACAGCAGAGGTTTCTTTGTTTGGAGGCTTGATTTCTCACTCGGATGGACTTTTAGACTCCGCAATCGTCTGCTTACAAAATGTTTACTTGGCAGATGGCTTGCGGAAATCCAATGAAGATACTGGTGGTATTGTTTCCTTAATGAGAAAGCTGTGCAGCTTCATGCTCTTGGTTCCAGGTAATTTAGAACAAGGAGTTACATGCATTCCCAAGAGCATATTATCCTTGCTTGATTCACAATCATGGATTACACCAAAATCAAGGATAAAGGTCTTATGTTCACTTCTTTCATCATCTGCAACATGTGCTCAAATTGAGCTCCCATACCATGCAATTCATGAAGAGGTTATTGGCAATGACCGTTTATTCTTTGGTCATGAAATATATACCCGAGAACTTGAGTCGTTATCTAGTGTTATTATTCATAACATGGTCGATACTATTTCACAAGAATCTTCACAGGCTACACGAGGAAAGATGGCACTGGAAGCTTGCAACTGTATTGCCTCATTTTTTCAAGTGAATAACGAGATATCATCAATATGCTCGAAGCTGGTGGAGACCGCCACATCATGTCTTGGAGCTAATGACAAATATTTGCAGTCGACGATTAACTTTGTACATAAACAGTCCCCAGTGTGTGTCGAGGGATAG | 2742 | 39.75 | MEFKSRDYKAEEEAYSVTRVSVSSHPLCSSPSPSSSAHTQDDGNFEFSDPLRGMSMEIKEHVEDTAVPEKRHVRQATSHISAKEWVSFNKLLMQRFPVPKMISVSSVSSKTIKGKKVTGELPANVQSDELNESQKLTEGGFKIVSQQEYIKRLHELKDEIMRAWGSDDRVTSLKLSIKVARLLMDTSVAHFYPTLFVLATDIMEMLGDMVWERIKEKAEFADDGTKICTLSDDFKANNVCLEAKETCSNWFRKIASIHELLPRIYLELAIFPCWRFLHDNAVDNLMRLVMMIRGIADPLASAYSLFFLLHCAQKIPQHDTGHLIACINDQKVVFARIVSMKETKYGNFLGDRRLLISLMEPTIEYAMRCIFRDPDQVADMIVRLDLGKYPLELNGKVPWISVILHYLLKELPVEVVCANAVEILRLVDCSHDCSFDQCLNYKMLGLKLCEGISRVNAVDAVIDEVMQVATQRKSFDEYLKILDSYMDIILQYKMDLYLSSSLSEIFERLCNEVVTENELASLQSIVVKLVTHFDNMQYVFDLNYFVDILDVMHGSSRSIVSMHILTIATRNDRIYDPTTVKLLFDVAQSLHDSVDFSSTKQDDNQQAERLIARFIDKVDHGTDLDRHLTFLVECRGAFSSMNDLKEILVHSSNLLATRALRAKKENLSFVKSCITFNEVTVPCIPSHSRQLILYLETAEVSLFGGLISHSDGLLDSAIVCLQNVYLADGLRKSNEDTGGIVSLMRKLCSFMLLVPGNLEQGVTCIPKSILSLLDSQSWITPKSRIKVLCSLLSSSATCAQIELPYHAIHEEVIGNDRLFFGHEIYTRELESLSSVIIHNMVDTISQESSQATRGKMALEACNCIASFFQVNNEISSICSKLVETATSCLGANDKYLQSTINFVHKQSPVCVEG | 913 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi2g04203 | 913 | PANTHER | ESOPHAGEAL CANCER ASSOCIATED PROTEIN | 2 | 906 | IPR029705 | GO:0005768(PANTHER)|GO:0032456(PANTHER)|GO:0032456(InterPro) | |
| Lomi2g04203 | 913 | MobiDBLite | consensus disorder prediction | 21 | 43 | - | - | |
| Lomi2g04203 | 913 | MobiDBLite | consensus disorder prediction | 21 | 45 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi2g04203 | K25731 | VPS35 endosomal protein-sorting factor-like |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 324162 | Lomi2g04203 | Lomi1g00440 | |
| 333315 | Lomi1g00440 | Lomi2g04203 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lomi | Lomi-Chr1:4019637 | Lomi2g04203 | Lomi-Chr2:47535911 | wgd |