AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04203 ATGGAATTTAAATCGCGTGATTACAAAGCTGAAGAAGAAGCATATTCAGTCACTCGTGTTTCAGTTTCTTCACATCCTCTATGTTCATCTCCATCTCCATCTTCATCAGCACATACACAGGATGATGGGAATTTTGAATTCTCTGATCCGTTAAGGGGGATGTCAATGGAAATCAAGGAGCACGTTGAAGATACCGCTGTCCCAGAAAAGCGTCATGTTCGTCAAGCCACTTCTCATATCTCTGCAAAAGAATGGGTATCTTTTAATAAGCTGTTAATGCAGAGATTTCCCGTGCCAAAAATGATTTCGGTTTCTTCGGTGTCGAGCAAAACGATAAAGGGCAAGAAAGTAACTGGAGAACTACCAGCAAATGTGCAGTCAGATGAACTGAATGAATCTCAAAAGTTGACTGAAGGAGGGTTTAAGATTGTAAGCCAGCAGGAGTATATCAAACGATTGCATGAACTTAAAGACGAGATCATGCGTGCTTGGGGTTCTGATGATCGTGTGACATCTTTAAAGTTGTCTATTAAGGTTGCTAGGCTTCTGATGGACACCTCCGTGGCACATTTTTATCCAACGTTATTTGTTCTAGCTACTGATATAATGGAAATGCTAGGTGACATGGTATGGGAGCGGATTAAGGAGAAAGCCGAGTTTGCAGATGACGGGACCAAAATATGCACTCTATCAGATGACTTTAAAGCAAATAATGTATGCCTTGAAGCCAAAGAGACATGCAGTAACTGGTTCCGAAAAATTGCTTCCATCCATGAGCTTCTTCCACGCATCTATCTTGAGCTTGCAATATTCCCATGCTGGCGGTTCCTTCATGATAATGCCGTGGATAACCTCATGCGTTTAGTGATGATGATAAGAGGGATTGCAGATCCACTGGCATCAGCATACAGCCTCTTCTTTTTGCTTCACTGTGCCCAGAAAATTCCTCAACATGATACAGGGCATCTGATAGCTTGCATTAATGACCAAAAAGTTGTATTTGCACGGATTGTATCTATGAAAGAAACCAAGTATGGGAACTTTTTGGGAGATAGAAGATTACTTATTAGCCTGATGGAACCAACGATTGAATATGCTATGAGATGTATATTTAGAGATCCAGACCAAGTTGCTGATATGATTGTGAGACTTGATTTAGGAAAGTATCCATTAGAGTTAAATGGAAAAGTTCCTTGGATATCAGTTATCCTCCATTATCTACTTAAGGAACTTCCAGTTGAAGTAGTATGTGCCAATGCTGTTGAAATTCTTCGCCTTGTTGACTGCAGCCACGATTGTTCCTTTGATCAGTGTTTGAATTACAAGATGCTTGGGTTAAAGCTTTGTGAGGGAATATCTCGGGTGAATGCAGTTGATGCAGTAATTGATGAAGTAATGCAGGTTGCAACCCAAAGGAAGAGCTTTGATGAGTACTTGAAGATCTTGGACTCTTATATGGATATTATTCTTCAGTATAAGATGGATCTATATCTAAGCTCCTCTCTGAGTGAAATATTTGAGAGATTGTGCAATGAAGTGGTTACTGAAAATGAACTTGCTAGCCTACAATCAATTGTTGTAAAGCTGGTCACACATTTCGATAATATGCAATATGTTTTTGATCTGAACTATTTTGTTGACATATTGGATGTCATGCACGGTAGCTCAAGAAGCATTGTGAGTATGCACATCCTTACTATCGCCACAAGAAATGATCGCATTTATGATCCTACCACAGTGAAACTGCTATTTGATGTTGCCCAGTCTCTGCATGACAGTGTTGATTTCTCAAGCACAAAACAGGATGATAATCAACAGGCTGAGCGTTTAATTGCTCGTTTTATTGATAAGGTTGACCATGGTACAGATTTGGATCGCCATTTGACATTCTTAGTTGAGTGTCGTGGAGCTTTCAGCAGTATGAATGATCTGAAGGAGATCCTTGTTCATTCGAGCAATCTTTTAGCAACCAGAGCTTTGAGAGCGAAAAAAGAAAATTTGAGTTTTGTTAAATCTTGCATCACTTTTAATGAAGTTACAGTACCATGTATTCCATCTCATTCCAGGCAGTTAATCTTATACCTTGAAACAGCAGAGGTTTCTTTGTTTGGAGGCTTGATTTCTCACTCGGATGGACTTTTAGACTCCGCAATCGTCTGCTTACAAAATGTTTACTTGGCAGATGGCTTGCGGAAATCCAATGAAGATACTGGTGGTATTGTTTCCTTAATGAGAAAGCTGTGCAGCTTCATGCTCTTGGTTCCAGGTAATTTAGAACAAGGAGTTACATGCATTCCCAAGAGCATATTATCCTTGCTTGATTCACAATCATGGATTACACCAAAATCAAGGATAAAGGTCTTATGTTCACTTCTTTCATCATCTGCAACATGTGCTCAAATTGAGCTCCCATACCATGCAATTCATGAAGAGGTTATTGGCAATGACCGTTTATTCTTTGGTCATGAAATATATACCCGAGAACTTGAGTCGTTATCTAGTGTTATTATTCATAACATGGTCGATACTATTTCACAAGAATCTTCACAGGCTACACGAGGAAAGATGGCACTGGAAGCTTGCAACTGTATTGCCTCATTTTTTCAAGTGAATAACGAGATATCATCAATATGCTCGAAGCTGGTGGAGACCGCCACATCATGTCTTGGAGCTAATGACAAATATTTGCAGTCGACGATTAACTTTGTACATAAACAGTCCCCAGTGTGTGTCGAGGGATAG 2742 39.75 MEFKSRDYKAEEEAYSVTRVSVSSHPLCSSPSPSSSAHTQDDGNFEFSDPLRGMSMEIKEHVEDTAVPEKRHVRQATSHISAKEWVSFNKLLMQRFPVPKMISVSSVSSKTIKGKKVTGELPANVQSDELNESQKLTEGGFKIVSQQEYIKRLHELKDEIMRAWGSDDRVTSLKLSIKVARLLMDTSVAHFYPTLFVLATDIMEMLGDMVWERIKEKAEFADDGTKICTLSDDFKANNVCLEAKETCSNWFRKIASIHELLPRIYLELAIFPCWRFLHDNAVDNLMRLVMMIRGIADPLASAYSLFFLLHCAQKIPQHDTGHLIACINDQKVVFARIVSMKETKYGNFLGDRRLLISLMEPTIEYAMRCIFRDPDQVADMIVRLDLGKYPLELNGKVPWISVILHYLLKELPVEVVCANAVEILRLVDCSHDCSFDQCLNYKMLGLKLCEGISRVNAVDAVIDEVMQVATQRKSFDEYLKILDSYMDIILQYKMDLYLSSSLSEIFERLCNEVVTENELASLQSIVVKLVTHFDNMQYVFDLNYFVDILDVMHGSSRSIVSMHILTIATRNDRIYDPTTVKLLFDVAQSLHDSVDFSSTKQDDNQQAERLIARFIDKVDHGTDLDRHLTFLVECRGAFSSMNDLKEILVHSSNLLATRALRAKKENLSFVKSCITFNEVTVPCIPSHSRQLILYLETAEVSLFGGLISHSDGLLDSAIVCLQNVYLADGLRKSNEDTGGIVSLMRKLCSFMLLVPGNLEQGVTCIPKSILSLLDSQSWITPKSRIKVLCSLLSSSATCAQIELPYHAIHEEVIGNDRLFFGHEIYTRELESLSSVIIHNMVDTISQESSQATRGKMALEACNCIASFFQVNNEISSICSKLVETATSCLGANDKYLQSTINFVHKQSPVCVEG 913
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04203 913 PANTHER ESOPHAGEAL CANCER ASSOCIATED PROTEIN 2 906 IPR029705 GO:0005768(PANTHER)|GO:0032456(PANTHER)|GO:0032456(InterPro)
Lomi2g04203 913 MobiDBLite consensus disorder prediction 21 43 - -
Lomi2g04203 913 MobiDBLite consensus disorder prediction 21 45 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04203 K25731 VPS35 endosomal protein-sorting factor-like
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
324162 Lomi2g04203 Lomi1g00440
333315 Lomi1g00440 Lomi2g04203
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:4019637 Lomi2g04203 Lomi-Chr2:47535911 wgd