AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03414 ATGGTGGATGTGGATGGTAAAGAGAACGAGGGTGGTAATGGCGATGATAAGAAGAAGAAGAACCGTCTAAGGATGCGATGGGGAATTATCGGAGCTATGATCACAGTTTTAGTTGCCGTATCTCTCAATCCTTGGCGGAATTCTCTCAATCTATCTCTCCTCCATAAATCGTACCTCTGTTCTGAGGATACCTGTAAATACACAGGCCTCATTGAGGACTGTTGTTGCGACTTTGAAAGTGTTGATGATATTAATGGCGCAGTTCTACATCCATTGTTACAAGAGCTTGTTACCACTCCCTTCTTCCGATACTTCAAGGTTAAATTATGGTGTGATTGCCCTTTCTGGCCTGATGATGGAATGTGTAAAATGCGTGATTGCAATGTATGCGAGTGTCCAGAACATGAATTCCCAGAATCTTTTAAAACACCATCATTAAATGTTCTTCCAAAAGATGATCCTGTATGTCAAGAGGGAAAACCAGAAGCTACTGTGGATCGAACCCTAGATGACAAGTCATTTAAAGGCTGGGTAGAAGTCGATAATCCATGGACTCATGATGATGAAACTGATAATGAAGAAATGACGTATGTGAATCTGCAATTAAATCCCGAACATCATACTGGATACACGGGTCCATCAGCTAGAAGAATATGGGTTGCTATATACTCGGAACATTGTCCAAGATATGCATATGGGGAGATGTGCCCAGAGAAGAAAGTACTATACAAGCTAATATCGGGTCTTCACTCCTCAATTTCAATCCACATAGCTGCTGATTATCTTCTTGACATAAAAAATAATAAGCGGGGTCCAAATCTGAAATTGATGCGTGACCGAGTATTGAAACATCCTGATCGCGTGCAAAATCTTTACTTCACTTTTTTATTCATTCTTAGAGCTGTGACAAAAGCAGGTGGTTATTTGAATGAGGCGGAGTATGATTCAGGGAACGATTTAGAGGATATGAAAGCGGGAGAATTGATAAGAAGATTGGTGCATAATCCCAAATTACAAGCTGCATGTGCACTTCCATTTAATGAAGCTGAATTATGGCAAGGTCAAGGTGGGCCCATGCTTAGGCAACAAATCCAAAATCAATTTCTAAACATCAGTGCATTGATGGACTGTGTGGGGTGTGAGAAGTGTCGGCTTTGGGGGAAACTTCAGGTTCTTGGTATTGGAACGGCGTTAAAGATTTTGTTTTCCGTTAATGATAAGGGAAACCCAGACCCATATTTGCTGTTACAAAGAAATGAAGTGATTGCTCTAGTTAATTTACTAAATCGGCTATCGGAATCTCTTATGTTCGTTAATAAAATGGGGACTCCTGATAAAGAAATAATCAGCAAACCATGGGGATTGTCGTCAGTGGCTTATTGGTGGCCAAAATCTAACCAACAATTGTCATTGTCAACAAACACCACTGACCCATTTTGA 1440 40.49 MVDVDGKENEGGNGDDKKKKNRLRMRWGIIGAMITVLVAVSLNPWRNSLNLSLLHKSYLCSEDTCKYTGLIEDCCCDFESVDDINGAVLHPLLQELVTTPFFRYFKVKLWCDCPFWPDDGMCKMRDCNVCECPEHEFPESFKTPSLNVLPKDDPVCQEGKPEATVDRTLDDKSFKGWVEVDNPWTHDDETDNEEMTYVNLQLNPEHHTGYTGPSARRIWVAIYSEHCPRYAYGEMCPEKKVLYKLISGLHSSISIHIAADYLLDIKNNKRGPNLKLMRDRVLKHPDRVQNLYFTFLFILRAVTKAGGYLNEAEYDSGNDLEDMKAGELIRRLVHNPKLQAACALPFNEAELWQGQGGPMLRQQIQNQFLNISALMDCVGCEKCRLWGKLQVLGIGTALKILFSVNDKGNPDPYLLLQRNEVIALVNLLNRLSESLMFVNKMGTPDKEIISKPWGLSSVAYWWPKSNQQLSLSTNTTDPF 479
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03414 479 SUPERFAMILY ERO1-like 76 444 IPR037192 -
Lssa7g03414 479 PANTHER ERO1-RELATED 33 444 IPR007266 GO:0005783(InterPro)|GO:0005789(PANTHER)|GO:0015035(PANTHER)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(InterPro)|GO:0034975(PANTHER)|GO:0071949(InterPro)
Lssa7g03414 479 Pfam Endoplasmic Reticulum Oxidoreductin 1 (ERO1) 89 436 IPR007266 GO:0005783(InterPro)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(InterPro)|GO:0071949(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03414 K10950 ERO1-like protein alpha [EC:1.8.4.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:179339655 Lssa9g03737 Lssa-Chr9:187312351 dispersed