AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lssa7g03500 | ATGGCTTATCCCAAATCTTTCTATGCATCTTCCCTTCTACTTTTGCTCAGCTTTCAACTACTTTCCACCATTTCTGAAGCTGTAGTGCCTGCTTCAGACACCTTCACGTACATAAACGAAGGTGATTTTGGAGATTATGTGGTCGAGTACGATGCAGATTATCGTACTCTTCCCCCTTTTAGTAACCCATTCCAGCTTTGTTTCTACAACACCACCCCTAACGCATTCACTCTGGCTCTACGTATGGGTACTGTCCGATCGGAGTCCCTCATGCGTTGGGTTTGGGAAGCTAACCGGGGGAACCCTGTTCGTGAGAACGCCACCCTCACCTTCGGTACAGATGGAAACCTTCTCCTGGCGGATTCGGATGGCCGGATTGCCTGGCAAACTAATACCGCCAACAAAGGTGTCGTCGGTTTTCAGTTACTCCCCACCGGCAACATGGTTCTTCATGATGGCAAGGGGAATTTCATATGGCAAAGTTTCGACTCCCCAACTGATACTCTTTTGGTAGGTCAATCTCTCAGAGCTGGTGGTGTCAGTAAGCTGGTGAGTCGGGCTTCTGCTGCGAACAACATCGATGGACCATATAGCGTGATCATGGAGCCTAAACAGCTAGCCATGTATTACACGAGCCCCAACTCGCCTCGCCCAATGCTTTATTGGACCTCTGTCGAATGGTTCAATGTTGACGTTGCTACTGTCACCAATGGTAGTTTGATAAACTTAACCCTTACTTCTGTCCCAGATACTGATGAGGGTTTTCTTTATTACTTAACTTTCCTGTATTACATCACAAACCCTCCCTCCGGTTGGAATCGCAACATGGCCTATTCAAGATACAACAACACGTTGTCCTACCTTCGACTAGGCATAGATGGAAACCTTAGATTCTACACGTATAACTCGAACGTACAAGGCGTGGCCTGGGAACTGGTCTACACGTTTCTTGACCGAAACTCCATTGAAGGAGAATGCCAGTTGCCAGAGCGATGTGGGAAGTTTGGGCTATGTGAGAATAGCGAATGTGTCGCATGCCCAACGTCAAACGGACTAAGTGGATGGAGCAAAGATTGTGAGGCAAAAGTGACATCTTGTAAAGCTAGCGACTTTGCTTACTACAAGCTTGAAGGTGTTGACCATTTTATGATTAAGTACACAAGGGGAGATGGTGGAAGGAAGCAAAGCGACTGCGAGAGCAAATGCACCAAGGACTGTAAGTGCATGGGCTATTTCTATCATACACAAGGATCGAGGTGCTGGATTGCTTACGATTTGAAAACATTAACAAGAGTTGGAAACTCGACACATTTGGCATACATCAAAGCACCCAAGAAGTAG | 1341 | 46.68 | MAYPKSFYASSLLLLLSFQLLSTISEAVVPASDTFTYINEGDFGDYVVEYDADYRTLPPFSNPFQLCFYNTTPNAFTLALRMGTVRSESLMRWVWEANRGNPVRENATLTFGTDGNLLLADSDGRIAWQTNTANKGVVGFQLLPTGNMVLHDGKGNFIWQSFDSPTDTLLVGQSLRAGGVSKLVSRASAANNIDGPYSVIMEPKQLAMYYTSPNSPRPMLYWTSVEWFNVDVATVTNGSLINLTLTSVPDTDEGFLYYLTFLYYITNPPSGWNRNMAYSRYNNTLSYLRLGIDGNLRFYTYNSNVQGVAWELVYTFLDRNSIEGECQLPERCGKFGLCENSECVACPTSNGLSGWSKDCEAKVTSCKASDFAYYKLEGVDHFMIKYTRGDGGRKQSDCESKCTKDCKCMGYFYHTQGSRCWIAYDLKTLTRVGNSTHLAYIKAPKK | 446 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lssa7g03500 | 446 | ProSiteProfiles | Bulb-type lectin domain profile. | 32 | 163 | IPR001480 | - | |
| Lssa7g03500 | 446 | CDD | B-lectin | 48 | 165 | IPR001480 | - | |
| Lssa7g03500 | 446 | Gene3D | - | 59 | 164 | IPR036426 | - | |
| Lssa7g03500 | 446 | SMART | blect-4 | 48 | 165 | IPR001480 | - | |
| Lssa7g03500 | 446 | Pfam | D-mannose binding lectin | 94 | 177 | IPR001480 | - | |
| Lssa7g03500 | 446 | PANTHER | G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 | 59 | 444 | IPR051343 | - | |
| Lssa7g03500 | 446 | PIRSF | SLG | 1 | 446 | IPR035446 | - | |
| Lssa7g03500 | 446 | Pfam | S-locus glycoprotein domain | 238 | 351 | IPR000858 | GO:0048544(InterPro) | |
| Lssa7g03500 | 446 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 73 | 215 | IPR036426 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lssa7g03500 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lssa | Lssa-Chr1:20396575 | Lssa7g03500 | Lssa-Chr7:184989961 | dispersed | |
| Lssa | Lssa-Chr7:184617818 | Lssa7g03500 | Lssa-Chr7:184989961 | dispersed | |
| Lssa | Lssa-Chr7:184807574 | Lssa7g03500 | Lssa-Chr7:184989961 | dispersed | |
| Lssa | Lssa-Chr7:184864610 | Lssa7g03500 | Lssa-Chr7:184989961 | dispersed | |
| Lssa | Lssa-Chr7:184917142 | Lssa7g03500 | Lssa-Chr7:184989961 | dispersed | |
| Lssa | Lssa-Chr7:184989961 | Lssa5g04825 | Lssa-Chr5:316758388 | dispersed | |
| Lssa | Lssa-Chr7:184922458 | Lssa7g03500 | Lssa-Chr7:184989961 | tandem |