AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02133 ATGGCGGTGTTATGTCTGTCATCTGATATGGTGTTACGTGCGACGGCGTTTTGTTTTACTCTGATAGCTGCGGTGGTTGCCGGTGTTGACCATGAAACTCATAAGATTCCGATCACAATTTCCGATAACATGCCGTCGTTCACCGTTTTCGTCACTGCTAAATGGCATTATCTTTCTTTCAGTGTATTCTTGGTGGTGGCAAATAGCATAGCATGTTCTTACTCATTTGCATCAATGATCCTTTCCATGAAAAAAATGATCAGAACCCACTTGACATTTCTCCTCTCCGACGTGATGATGATGGCGTTGCTGTTCTCCGCCAACGGAGCCGCCACCGCAGTCGGCATCATTGGTGTCAATGGCAACTCTCACACACAATGGCACAAGGTGTGTTATGTTTTCAAAAGTCACTGCCACCAGGGTGCAGCCTCAATAGCCATGTCTTTCCTTAGATCATTTGTGTTTTTATGGCTTGTGGTTTTTGCAATTCTAAACCTTCATAAAAAGTATACCTGA 516 44.19 MAVLCLSSDMVLRATAFCFTLIAAVVAGVDHETHKIPITISDNMPSFTVFVTAKWHYLSFSVFLVVANSIACSYSFASMILSMKKMIRTHLTFLLSDVMMMALLFSANGAATAVGIIGVNGNSHTQWHKVCYVFKSHCHQGAASIAMSFLRSFVFLWLVVFAILNLHKKYT 171
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02133 171 Pfam Casparian strip membrane protein domain 7 153 IPR006702 -
Mimi16g02133 171 PANTHER CASP-LIKE PROTEIN 1U1 9 167 IPR044173 -
Mimi16g02133 171 NCBIfam plant integral membrane protein TIGR01569 10 165 IPR006459 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02133 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:83841532 Mimi4g00873 Mimi-Chr4:16615242 transposed