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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02154 ATGCATTCAATTCCCAGACGACAATTGCTGGCAATTTCAACTGCCTTCCAATTCCATTCCATCCCCTGCTGTCTAAAACCTATCATCATCCCCGGATTTACGAACTCTAACTACCCCAAATTGGCTGAGCTTCACAAAAAGTACAGAGAAAAAGGTTTTGAGATCTTAGCATTTCCATGCAATCAATTCTTGTCCCAAGAACCTGAATCAAGTGAGAAAGTGGAACAATTTGCATGCACAAGGTTCAATGCTGAATATCCCATCTTCCATAAGATTCGTGTCAACGGACCAAAAGCTGCACCGGTGTACAAGTTTCTTAAAGCCAAGAAAAGAGGGTTTTGTGGGTCTAGGATCAAATGGAACTTCACAAAGTTCCTTGTGGATAAAGAAGGTCGAGTCATAGGCCGTTATGGACCATCTACGTCACCTTTATCCATTGAGGGTGATATTCAAAAAGCATTGAACGCACAATGA 474 41.77 MHSIPRRQLLAISTAFQFHSIPCCLKPIIIPGFTNSNYPKLAELHKKYREKGFEILAFPCNQFLSQEPESSEKVEQFACTRFNAEYPIFHKIRVNGPKAAPVYKFLKAKKRGFCGSRIKWNFTKFLVDKEGRVIGRYGPSTSPLSIEGDIQKALNAQ 157
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02154 157 Gene3D Glutaredoxin 29 156 - -
Mimi16g02154 157 FunFam Glutathione peroxidase 28 156 - -
Mimi16g02154 157 PANTHER GLUTATHIONE PEROXIDASE 32 155 IPR000889 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0005829(PANTHER)|GO:0006979(InterPro)
Mimi16g02154 157 ProSitePatterns Glutathione peroxidases signature 2. 56 63 IPR029760 -
Mimi16g02154 157 CDD GSH-Peroxidase 32 150 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Mimi16g02154 157 Pfam Glutathione peroxidase 32 107 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Mimi16g02154 157 SUPERFAMILY Thioredoxin-like 32 154 IPR036249 -
Mimi16g02154 157 PRINTS Glutathione peroxidase family signature 53 69 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Mimi16g02154 157 PRINTS Glutathione peroxidase family signature 118 127 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Mimi16g02154 157 ProSiteProfiles Glutathione peroxidase profile. 32 157 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02154 K00432 glutathione peroxidase [EC:1.11.1.9]
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Event-related genes

Select Gene_1 Gene_2 Event_name
129620 Mimi16g02154 Mimi5g01527
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:84260400 Mimi9g00071 Mimi-Chr9:1426131 dispersed
Mimi Mimi-Chr16:84260400 Mimi5g01527 Mimi-Chr5:72972453 wgd