AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi2g00118 ATGAAGGAGCAGGTTGTCGCCGACGAGAAATCCGACGGTCTGGATATCGTTTCGATCGGAAAATTGTACGAAGGTCCATGGGAGAAGAAGTATTGGAGTTCATCCAGGGGTAAAGACAGGCATCCGTATCCAGTTGGCTATGTAGCTAATTGGGTCAATAATGGGAATACCTACAAGATGGCAATTCTTGAGGGACTTAAAGGACCTGAATTTGTGATTAGTTCCACGGATGGGCAATCATGTTCTGGTCAAACTCCAGATATTGCATGGGAGGGCTTTCAGAAGAAGAGCTGTGCTCGCATAAAGTTTTGGCGAGGAAAGAGATTTTCATGCAAGATAGATGGTGCAGAGCTTTTTGGGTTCAAGAATCTACATGTCATGAGATTACTGCGGGGATTGAAGGCAAATGTCAGCCAAGTCACAGAGAAAAGTTTGCAATCTTTGTCTTCTAGCAACAAACAGTCTGAAGGAACCCACGAATATCATACTAAGGATCCTGATTTGCAAGTGAATTTGGTTAAAATCCAGGGTAAAGAGAAAAAAAGGAATAAACGTAAAGAAATTCAAGTGAAATCAATTGATGGGCCTGAACCTAAAAGAGAGCAGCGTCCTCAAGATTTGAACCAAAGTAGTCATGAACCACATTGCAGGCAGAGTTATGAAGGAAGTCATAACGATGGGATTTGTTCAACTTCATCAAATTTAAATGGAAAAAATATAGCTCATATATTATCAGCAAAGGGAGAGAGGCAGTGTGATTCCCTTATTCTATCTGACAATCTTGATAGAGAGAAATGTTCTTCTGTCCCTGAAGCAGGCAATTTGATTGGTCCCAAAGATCTTACAATCACCGAAGAAGGTGCCAAGTTGTTAAAAAGCCAAGAAAATCATGACTTGTCGATGATTAGCCACACACCAGGGGTCACTTTCTCAAAATCGGTAGATGAAAAGAGAGATCCATCCCTTCGAAAAGAATCACATATGTTGGATGATGTGGACCTCTATGCACCTGATACTTTGGATCTAGCCTTAGACAGTGCATGCAATTTGGAGGTGGAGATCCCTGAAGAAAGTAAATGCACTTTAGATGACAAGTTAAATTCTACCCAAATTTTATTTTCTGAAAATTGTGTAACTGATTCTCCTTCAAAGGATGTGATGGTGATAGCTGCTGGAGGCGATCATTCTGAAAAGACTGATTCAGATCCAATTGGACAAGAAATATCCAACTCAATGATGGAATTACTGCTTCCGCGAGCTCTACCTCTGCTTAAAACTTTCAAAAGAAAGAAAAAGAAAAATCTTGATGGAATGTTCAAGGATAGAAAAGAGGTTAACCAATACCTAAAAGATGAATCTCCAGCCATATCTTCTGAGCACTTGGGAATGCTTAGCGGTGAAGGTCACATTCCAGACAAACCTTGTACTGAAAACTTTACATTTGAGAAGCAGAATGAAAATGATCTTTTCCCTAGTACAAATACGGGTGCAACTGAATGTACTTTAGAAGATTCAGCAACTGTTGCACCTGATAGTTTTGAGAATGACCAATGTGAAGTCATGGATTGCTCTCTGGCTGTTAAAGCTGATCAAAATGCTTTCAGTTTAGATTTATGCACCCGTGAAGGGCTCCATGAAGGAGTACAAGTTAGTGTTGGCAATGCGTCTTCTATGCTAAGTGTTGATCATGAAGCTCACAAGGGAATAATAGGTTCCATAGAAGGAGTTGATGCAGCAGTTCCACCATATCAAGAAGTAAATGATTTGATTCCAATTTTGCAAAGTCAAAGAATAAGTCATCCTGACAAGACTCAAATGGTGCACAATGATGAGGAAGTTAAAGTGGTGCCTATTGATGAACCAGTGAGTATCTTTGAACTTGTAGGCGGCTATATGTTTCCAACACCAATTTCAATGGCAATGTTGAGAACAAACGGCAATGAAGCATTTGCATGTGTTTTATGTGGCTATTTGATGGAAAACGAAAGGACTTTGTTCATTTACAAGACATCCATTAAAGGAGAAGCCAGAGGATGTCCGTCTTTTATTGGTCACACAAAAATTATCTCACCAACTTCAAGGAATGCATCTGGTAGACAAATTATTTTGGATAGTTCTAGTTTACAGTTTACTCCAGATGGAAAATCCCTTGTTTTACTAAGCAATATTAAAGTTCCTTACTGCAGGGAGGGCAGTGTGATCTGTGGGTGTTCAGTTTGTACATCAGATTGCTTCGAGAAGAATGCAGTACAAATTGTGCAAGTTAAAGTTGGCTATGTTCAAGTAGTATGCAAACTGAAAACAACCAACAATGTGTACTCCATATTAATTTGTGAACCTAATTATCTTGTAGCTTCTGAAGAGAGTGGAAAATTGAACTTATGGACCATGAACTCATCATGGAGTGCACCAACAGACCAGAGCTATTTGTCAACTTCTGATTGCATTCCTAACTGTATAGTTGAGATGAAGAGAATACCAAATTTTCCAGCTCTTATTGTTAGCCATAGTGCATCTGGGGATTTTTGCTTATGGGATTTATCAAGAAGAACCATTTTGTCCAAGTTTTCAGCTCCAAGAACTTCATTTCTCCCCTTCATTCCAGTCAATTTGTTTAGGTATCCTGGTCAGCCTTTAGCTACCTCAGATACATGTAGGAAGAAGCAAGTAGAAGACATCATGGAAGAAACACAAAGGTGGTCTTTAGAAACAGACAACCATAATTGTTTTCCAGTAAATGAAGAACATCTGTCACTTGTTCTTCTTGTCTCATCTGTATCGAATCTTGAGTTTGCTGATGAATATTCATATAAAGATTCGAGAGCCGGTTCAGCTGGATCATGGAGCCTAGCATTGTTGGCCAAAAACAAAGTGGTTTCTGAAAATGCTTTGGATCCAAGTGCCACTGTAGTTGGTGCATCATCAGGTTATGGAATCATTGGTACACGTGACGGTTCTTTGTACATTTGGGAATTAGCCTCAGGCACCAAGCTTGGTAATATCAGCCATTGCACCGAGGGAGAACAGCCTTTGGCTGTAAGGTTGTCATCAAAAACAAGCATGAAATTTTGCATGGCGGTTGTGAAAAGAAATGAAGAAGAGAGCAGCCCTGATGGGCTGAGCAGCAGATTCAATTGTCAGTGCCAATCAGCAGAAAAGAGACCATTGGGAAACAATTGGCGTGAGGCAATCAGAATTCGATCAAATCTGTGTGATTCAGATTGGGAACGATCGAACTTGGGATTGACTGGAAGCTGTGAGAGCTTCAATCAGGGTGACTGGGAGCTATGTACAAAGAAACAAAAGAAGGCAAAAGAGATGCAAGAGATGGATGCTGAAAATAACCTTTGTGTTCTAGAGAGCCACATCTAG 3372 40.09 MKEQVVADEKSDGLDIVSIGKLYEGPWEKKYWSSSRGKDRHPYPVGYVANWVNNGNTYKMAILEGLKGPEFVISSTDGQSCSGQTPDIAWEGFQKKSCARIKFWRGKRFSCKIDGAELFGFKNLHVMRLLRGLKANVSQVTEKSLQSLSSSNKQSEGTHEYHTKDPDLQVNLVKIQGKEKKRNKRKEIQVKSIDGPEPKREQRPQDLNQSSHEPHCRQSYEGSHNDGICSTSSNLNGKNIAHILSAKGERQCDSLILSDNLDREKCSSVPEAGNLIGPKDLTITEEGAKLLKSQENHDLSMISHTPGVTFSKSVDEKRDPSLRKESHMLDDVDLYAPDTLDLALDSACNLEVEIPEESKCTLDDKLNSTQILFSENCVTDSPSKDVMVIAAGGDHSEKTDSDPIGQEISNSMMELLLPRALPLLKTFKRKKKKNLDGMFKDRKEVNQYLKDESPAISSEHLGMLSGEGHIPDKPCTENFTFEKQNENDLFPSTNTGATECTLEDSATVAPDSFENDQCEVMDCSLAVKADQNAFSLDLCTREGLHEGVQVSVGNASSMLSVDHEAHKGIIGSIEGVDAAVPPYQEVNDLIPILQSQRISHPDKTQMVHNDEEVKVVPIDEPVSIFELVGGYMFPTPISMAMLRTNGNEAFACVLCGYLMENERTLFIYKTSIKGEARGCPSFIGHTKIISPTSRNASGRQIILDSSSLQFTPDGKSLVLLSNIKVPYCREGSVICGCSVCTSDCFEKNAVQIVQVKVGYVQVVCKLKTTNNVYSILICEPNYLVASEESGKLNLWTMNSSWSAPTDQSYLSTSDCIPNCIVEMKRIPNFPALIVSHSASGDFCLWDLSRRTILSKFSAPRTSFLPFIPVNLFRYPGQPLATSDTCRKKQVEDIMEETQRWSLETDNHNCFPVNEEHLSLVLLVSSVSNLEFADEYSYKDSRAGSAGSWSLALLAKNKVVSENALDPSATVVGASSGYGIIGTRDGSLYIWELASGTKLGNISHCTEGEQPLAVRLSSKTSMKFCMAVVKRNEEESSPDGLSSRFNCQCQSAEKRPLGNNWREAIRIRSNLCDSDWERSNLGLTGSCESFNQGDWELCTKKQKKAKEMQEMDAENNLCVLESHI 1123
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi2g00118 1123 MobiDBLite consensus disorder prediction 174 210 - -
Mimi2g00118 1123 Gene3D - 744 1038 IPR015943 GO:0005515(InterPro)
Mimi2g00118 1123 ProSiteProfiles FYR domain FYRC motif profile. 66 146 IPR003889 GO:0005634(InterPro)
Mimi2g00118 1123 MobiDBLite consensus disorder prediction 146 225 - -
Mimi2g00118 1123 SUPERFAMILY WD40 repeat-like 706 1003 IPR036322 GO:0005515(InterPro)
Mimi2g00118 1123 PANTHER TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1 7 538 IPR040092 GO:0005634(PANTHER)|GO:0051726(PANTHER)
Mimi2g00118 1123 Gene3D - 10 137 - -
Mimi2g00118 1123 ProSiteProfiles FYR domain FYRN motif profile. 6 65 IPR003888 GO:0005634(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi2g00118 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr2:3054172 Mimi2g00482 Mimi-Chr2:28709024 dispersed
Mimi Mimi-Chr1:100891542 Mimi2g00118 Mimi-Chr2:3054172 transposed
Mimi Mimi-Chr2:3054172 Mimi2g00146 Mimi-Chr2:4750210 wgd