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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu1g00548 ATGGATGCACCAGACGAAAGCCCTTCTGCTAAAAGATGGCTTCCTCTCGAAGCCAACCCTGATATCATGAATCAGTTCCTTCGGGGCCTTGGTCTTCCCCCGGATGAAGCTGAGTTCTATGATGTGTATGGTTTGGACGAAGAACTCTTGGAAATGGTTCCTAAACCTGTTCTTGCTGTGCTTTTCCTTTTCCCTGTTAATGCCGAGAGCGAGGCAGAGAGAGCATTGGAGAAAGAGAGTGCAAAGAAGGAAACAAGTGACAAAGTTTATTTCTTGAAACAAACTGTTGGAAACGCTTGTGGAACAATTGGACTTCTTCATGCAATAGGGAATGTATCTAAAGAGATCAAGCTATTTGAGGGGTCATTCTTGGATAGGTTCTTCAAATCAACTGCTAACATGGATCCATTGGAGCGTGCTGCTTTCCTTGAGAATGACAGGGAAATGGAAGTTGCACACTCAGTAGCAGCGACTGCTGGTGATACAGAGGCTCCAGACATCAACACAAACGTGGATACTCATTTCATTTGCTTCTCATGTGTTGATGGAGAACTGTATGAGCTTGATGGAAGAAGGTCGCAACCCATATCACATGGTTCATCTTCACCCAGCAGCTTATTGCAGGATGCGGCCAAAGTCATAAAAGCAATGATCGAGAAGACTCCCGAGTCAATAAATTTCAACGTCATTGCATTTTCGAGGAAAGTTGCGGAATCATCATAG 723 44.4 MDAPDESPSAKRWLPLEANPDIMNQFLRGLGLPPDEAEFYDVYGLDEELLEMVPKPVLAVLFLFPVNAESEAERALEKESAKKETSDKVYFLKQTVGNACGTIGLLHAIGNVSKEIKLFEGSFLDRFFKSTANMDPLERAAFLENDREMEVAHSVAATAGDTEAPDINTNVDTHFICFSCVDGELYELDGRRSQPISHGSSSPSSLLQDAAKVIKAMIEKTPESINFNVIAFSRKVAESS 240
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu1g00548 240 Pfam Ubiquitin carboxyl-terminal hydrolase, family 1 13 219 IPR001578 GO:0004843(InterPro)|GO:0006511(InterPro)
Nenu1g00548 240 SUPERFAMILY Cysteine proteinases 11 233 IPR038765 -
Nenu1g00548 240 CDD Peptidase-C12-UCH-L1-L3 13 232 - -
Nenu1g00548 240 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 94 111 IPR001578 GO:0004843(InterPro)|GO:0006511(InterPro)
Nenu1g00548 240 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 185 195 IPR001578 GO:0004843(InterPro)|GO:0006511(InterPro)
Nenu1g00548 240 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 169 180 IPR001578 GO:0004843(InterPro)|GO:0006511(InterPro)
Nenu1g00548 240 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 53 65 IPR001578 GO:0004843(InterPro)|GO:0006511(InterPro)
Nenu1g00548 240 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 15 32 IPR001578 GO:0004843(InterPro)|GO:0006511(InterPro)
Nenu1g00548 240 FunFam Ubiquitin carboxyl-terminal hydrolase 7 235 - -
Nenu1g00548 240 Gene3D - 7 235 IPR036959 GO:0004843(InterPro)|GO:0006511(InterPro)
Nenu1g00548 240 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 234 IPR001578 GO:0004843(InterPro)|GO:0004843(PANTHER)|GO:0005737(PANTHER)|GO:0006511(InterPro)|GO:0016579(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu1g00548 K05609 ubiquitin carboxyl-terminal hydrolase L3 [EC:3.4.19.12]