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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu6g01111 ATGGCTTCGACGATGCTAGGCGCCTGTCTCCGGCAGTCTGTAACTCCTGCTGCCCTCCGATCATATCTAGCAGAGTTCATCTCCACATTCCTCTTTGTCTTCGCTTCTGTCGGTTCCTCCATGTCTTCCCGCAAGCTAATGCCGGATGCGTCGTCCTCTCCCTCTGCTCTGGTGGCCATCGCCGTTGCTAATGCATTTGCACTATCGTCAACAGTTTACATCTCTGCTAACATCTCAGGGGGCCACGTGAATCCCGCTGTGACCTTTGGGATGGCCGTTTGCGGGCGCATCAGCGTCTTGACAGCCATGTTCTACTGGGTTGCACAGTTGCTGGCTTCCACCATGGCATGTCTGCTCCTGAGGGTGGCTACCGCCGGACAAGCGATTCCGAACCATGCGATAGCGGAGGAGATGACCGGTTTCGGAGGAGCTGTGGTGGAGAGTGTGATAACGTTTGCTTTGGTATACACGGTCTACGCTGCCGGAGACCCGAGGAGAGGTTCTTTTGGTGTCATCGGCCCCGTTGCAATCGGGTTAGTTGTGGGAGCCAATGTTTTGGCCGCGGGACCGTTCACGGGTGGATCCATGAACCCGGTGTGTTCATTCGGGTCAGCTCTCATTAGTGGGAATTTCAAGAACCAAGGGGTTTATTGGGTCGGACCCTTGATCGGGGCAGCGATTGCTGGCCTTGTCTATGACAATGTGATGTTCCCTCCTCAGCTTCCTTCGGATTCATCTCATGGTGTGGTGGAGGTAGTTGTGGGGTATAACTAG 774 54.91 MASTMLGACLRQSVTPAALRSYLAEFISTFLFVFASVGSSMSSRKLMPDASSSPSALVAIAVANAFALSSTVYISANISGGHVNPAVTFGMAVCGRISVLTAMFYWVAQLLASTMACLLLRVATAGQAIPNHAIAEEMTGFGGAVVESVITFALVYTVYAAGDPRRGSFGVIGPVAIGLVVGANVLAAGPFTGGSMNPVCSFGSALISGNFKNQGVYWVGPLIGAAIAGLVYDNVMFPPQLPSDSSHGVVEVVVGYN 257
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu6g01111 257 SUPERFAMILY Aquaporin-like 14 239 IPR023271 -
Nenu6g01111 257 PANTHER AQUAPORIN-8 7 237 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Nenu6g01111 257 Pfam Major intrinsic protein 15 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Nenu6g01111 257 FunFam Probable aquaporin TIP5-1 4 244 - -
Nenu6g01111 257 CDD MIP 20 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Nenu6g01111 257 ProSitePatterns MIP family signature. 82 90 IPR022357 -
Nenu6g01111 257 PRINTS Major intrinsic protein family signature 20 39 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Nenu6g01111 257 PRINTS Major intrinsic protein family signature 101 120 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Nenu6g01111 257 PRINTS Major intrinsic protein family signature 64 88 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Nenu6g01111 257 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Nenu6g01111 257 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Nenu6g01111 257 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Nenu6g01111 257 Gene3D Glycerol uptake facilitator protein. 5 241 IPR023271 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu6g01111 K09873 aquaporin TIP
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr6:37966583 Nenu6g02094 Nenu-Chr6:59435001 dispersed
Nenu Nenu-Chr6:37966583 Nenu6g01112 Nenu-Chr6:37968993 tandem
Nenu Nenu-Chr1:17912137 Nenu6g01111 Nenu-Chr6:37966583 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Nenu1g00638 . 4 248 Major Intrinsic Protein gene family AT3G47440 56.275 2.16e-95 278.0
Nenu1g01072 . 1 285 Major Intrinsic Protein gene family AT2G45960 86.316 0.0 518.0
Nenu1g01497 . 1 344 Major Intrinsic Protein gene family AT1G31880 65.684 4.51e-159 448.0
Nenu1g01582 . 17 261 Major Intrinsic Protein gene family AT3G06100 50.0 1.88e-89 266.0
Nenu1g03379 . 1 124 Major Intrinsic Protein gene family AT3G54820 54.762 5.18e-37 125.0
Nenu1g04135 . 26 278 Major Intrinsic Protein gene family AT2G45960 30.935 2.01e-25 101.0
Nenu1g04329 . 283 343 Major Intrinsic Protein gene family AT1G31880 59.016 8.03e-19 87.4
Nenu2g00169 . 1 250 Major Intrinsic Protein gene family AT4G01470 82.4 3.18e-149 414.0
Nenu2g00358 . 1 287 Major Intrinsic Protein gene family AT3G53420 82.578 2.75e-176 486.0
Nenu2g00816 . 1 286 Major Intrinsic Protein gene family AT4G00430 84.965 0.0 510.0
Nenu2g00956 . 1 250 Major Intrinsic Protein gene family AT3G16240 82.4 5.46e-148 411.0
Nenu2g00961 . 1 230 Major Intrinsic Protein gene family AT2G25810 67.965 1.19e-99 291.0
Nenu2g02019 . 1 286 Major Intrinsic Protein gene family AT3G54820 77.003 1.06e-157 438.0
Nenu2g02440 . 1 286 Major Intrinsic Protein gene family AT4G00430 89.51 0.0 535.0
Nenu2g02575 . 1 251 Major Intrinsic Protein gene family AT2G36830 82.869 1.05e-152 423.0
Nenu2g03012 . 278 343 Major Intrinsic Protein gene family AT1G31880 41.791 1.91e-10 62.0
Nenu2g03013 . 278 343 Major Intrinsic Protein gene family AT1G31880 41.791 1.71e-10 61.6
Nenu2g03286 . 29 203 Major Intrinsic Protein gene family AT1G31880 31.527 1.64e-17 83.6
Nenu3g00715 . 1 289 Major Intrinsic Protein gene family AT4G18910 65.411 7.22e-136 384.0
Nenu3g01422 . 1 88 Major Intrinsic Protein gene family AT3G53420 68.182 1.87e-37 126.0
Nenu3g01858 . 1 344 Major Intrinsic Protein gene family AT1G31880 63.395 5.38e-147 417.0
Nenu3g02139 . 141 188 Major Intrinsic Protein gene family AT3G61430 70.833 1.48e-14 65.1
Nenu3g02378 . 6 268 Major Intrinsic Protein gene family AT1G73190 66.16 1.14e-113 325.0
Nenu3g02379 . 6 267 Major Intrinsic Protein gene family AT1G17810 66.031 2.54e-114 327.0
Nenu3g02606 . 1 106 Major Intrinsic Protein gene family AT3G53420 60.748 7.84e-36 125.0
Nenu3g02618 . 5 279 Major Intrinsic Protein gene family AT5G37810 62.5 3.94e-124 353.0
Nenu3g03303 . 142 196 Major Intrinsic Protein gene family AT1G31880 52.727 7.61e-14 72.4
Nenu4g01109 . 2 227 Major Intrinsic Protein gene family AT3G04090 58.261 1.85e-76 229.0
Nenu4g01301 . 286 343 Major Intrinsic Protein gene family AT1G31880 50.0 5.71e-14 72.8
Nenu4g01697 . 10 206 Major Intrinsic Protein gene family AT5G37820 64.824 1.59e-86 259.0
Nenu4g02209 . 43 283 Major Intrinsic Protein gene family AT5G37820 49.187 4.35e-76 232.0
Nenu4g02245 . 29 195 Major Intrinsic Protein gene family AT1G31880 35.882 1.34e-18 87.0
Nenu4g03105 . 1 103 Major Intrinsic Protein gene family AT3G53420 65.049 1.87e-39 130.0
Nenu5g01314 . 251 343 Major Intrinsic Protein gene family AT1G31880 50.0 2.28e-20 92.4
Nenu5g02855 . 1 73 Major Intrinsic Protein gene family AT3G53420 58.974 1.21e-25 94.0
Nenu5g02858 . 29 297 Major Intrinsic Protein gene family AT4G10380 65.074 6.86e-129 367.0
Nenu5g02922 . 1 280 Major Intrinsic Protein gene family AT4G35100 87.5 0.0 503.0
Nenu6g00285 . 1 280 Major Intrinsic Protein gene family AT4G35100 87.143 0.0 502.0
Nenu6g00731 . 1 286 Major Intrinsic Protein gene family AT2G45960 87.762 0.0 522.0
Nenu6g01111 . 21 251 Major Intrinsic Protein gene family AT3G47440 64.069 4.72e-101 293.0
Nenu6g01112 . 1 247 Major Intrinsic Protein gene family AT5G47450 82.186 7.46e-147 408.0
Nenu6g01507 . 1 294 Major Intrinsic Protein gene family AT4G18910 63.636 6.85e-134 379.0
Nenu6g02094 . 1 251 Major Intrinsic Protein gene family AT2G36830 84.921 8.98e-154 426.0
Nenu6g02390 . 2 344 Major Intrinsic Protein gene family AT1G31880 46.31 7.98e-97 291.0
Nenu7g00649 . 288 343 Major Intrinsic Protein gene family AT1G31880 57.143 2.65e-16 80.1
Nenu7g01010 . 1 233 Major Intrinsic Protein gene family AT3G56950 45.957 5.98e-72 218.0
Nenu7g01011 . 1 236 Major Intrinsic Protein gene family AT3G56950 44.118 1.89e-68 208.0
Nenu7g01012 . 6 237 Major Intrinsic Protein gene family AT3G56950 41.88 1.80e-68 209.0
Nenu7g01014 . 22 231 Major Intrinsic Protein gene family AT3G56950 44.286 1.60e-60 189.0
Nenu7g01017 . 6 235 Major Intrinsic Protein gene family AT3G56950 55.556 1.40e-95 278.0
Nenu7g01037 . 29 304 Major Intrinsic Protein gene family AT4G10380 79.856 6.41e-162 451.0
Nenu8g00168 . 1 344 Major Intrinsic Protein gene family AT1G31880 46.335 4.55e-100 298.0
Nenu8g00480 . 1 245 Major Intrinsic Protein gene family AT2G25810 76.016 6.62e-122 345.0
Nenu8g00544 . 1 77 Major Intrinsic Protein gene family AT3G53420 58.824 7.11e-26 95.9
Nenu8g01073 . 1 305 Major Intrinsic Protein gene family AT1G80760 75.0 1.21e-160 449.0