AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu6g01128 ATGGCCACCAAAGGGTGGTGTAATGCTCGAGCCAACGAGGGAGAGAGACACAGAGAGATGAGGAGCGAGGTGGAGAAAACAGTGATCAAGCTGAACAGTGGCTCCAAGCTGCCCGTTCTCGGATTTGGCACGGCTGATTTCCCCTTTGATAGACTGAAAGTCGAGCTCGCAATACGAACGGCCCTCCAGTTGGGTTACCGGCATTTCGACACTGCAATGATATATGGTTCGGAGCCTGCCGTAGGTGGGGCTCTAATGGAGGCAATTCGTAGTGAGACGGTGAGCAGAGAAGACGTCTTTGTTACTTCTAAGCTCTGGGGATGTCATCACCACGACCCCGTTTCAGGACTCAAGCAAACTCTCAAGAACTTGGGGATGGAATATGTGGATCTGTACCTAATACACTGGCCAGCCAAATTAAAGGAGTGGGCGAATTATGTAATGCCAAAGGAAGAAGACTTTGGAGAGTTGGAGATGGAGTCGACATGGGCAGGAATGGAGAGATGCTTGGACATGGGGCTGTGCAGGTCCATCGGCGTCAGCAATTTCTCTTGCCGGAAGATTGAGCGACTGATGGAACACGCCTCACTTCTTCCTGCAGTGAATCAGGTGGAGATGCATCCAATGTGGAGGCAGAAGAAGCTAAGAGAATTCTGTGGCGAGCACAACATCCATGTAAGCGCTTATTCGCCTCTTGGGGGACCAGGGAGTCCATGGGGAACAAAGGCTGTAGTGGATAACCCTATCATACGTTCCATTGCCAGTAAACACAAAGCAACCCCAGCTCAGGTTGCTCTAAGTTGGGGACTATCTAAAGGAGTGAGTCTGATCATGAAAAGCTTCAACGAAGAAAGAATGAAGGAGAACATGGGAGCTCTGGAGGTGAAACTGGAGAAGGAGGATGTCCTCAAGATTGACAAGTTAGAAGAGAGGAAGATCATGAGAGGAGAATTTCTTGTTAATGCATCTACAAGCCCATACAAGACAATTCAAGATCTGTGGGATGATGAGATATAA 1017 48.97 MATKGWCNARANEGERHREMRSEVEKTVIKLNSGSKLPVLGFGTADFPFDRLKVELAIRTALQLGYRHFDTAMIYGSEPAVGGALMEAIRSETVSREDVFVTSKLWGCHHHDPVSGLKQTLKNLGMEYVDLYLIHWPAKLKEWANYVMPKEEDFGELEMESTWAGMERCLDMGLCRSIGVSNFSCRKIERLMEHASLLPAVNQVEMHPMWRQKKLREFCGEHNIHVSAYSPLGGPGSPWGTKAVVDNPIIRSIASKHKATPAQVALSWGLSKGVSLIMKSFNEERMKENMGALEVKLEKEDVLKIDKLEERKIMRGEFLVNASTSPYKTIQDLWDDEI 338
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu6g01128 338 ProSitePatterns Aldo-keto reductase family signature 2. 166 183 IPR018170 GO:0016491(InterPro)
Nenu6g01128 338 Gene3D - 26 338 IPR036812 -
Nenu6g01128 338 ProSitePatterns Aldo-keto reductase family signature 1. 65 82 IPR018170 GO:0016491(InterPro)
Nenu6g01128 338 PANTHER ALDO-KETO REDUCTASE 29 312 IPR020471 GO:0004032(PANTHER)|GO:0005829(PANTHER)|GO:0016491(InterPro)
Nenu6g01128 338 PIRSF AKR 22 332 IPR020471 GO:0016491(InterPro)
Nenu6g01128 338 Pfam Aldo-keto reductase family 40 309 IPR023210 -
Nenu6g01128 338 FunFam NADPH-dependent codeinone reductase 1-1 26 338 - -
Nenu6g01128 338 SUPERFAMILY NAD(P)-linked oxidoreductase 27 311 IPR036812 -
Nenu6g01128 338 PRINTS Aldo-keto reductase signature 200 229 IPR020471 GO:0016491(InterPro)
Nenu6g01128 338 PRINTS Aldo-keto reductase signature 244 268 IPR020471 GO:0016491(InterPro)
Nenu6g01128 338 PRINTS Aldo-keto reductase signature 61 85 IPR020471 GO:0016491(InterPro)
Nenu6g01128 338 PRINTS Aldo-keto reductase signature 166 183 IPR020471 GO:0016491(InterPro)
Nenu6g01128 338 PRINTS Aldo-keto reductase signature 119 137 IPR020471 GO:0016491(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu6g01128 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr4:74522771 Nenu6g01128 Nenu-Chr6:38459639 dispersed
Nenu Nenu-Chr5:36283945 Nenu6g01128 Nenu-Chr6:38459639 dispersed
Nenu Nenu-Chr5:55362983 Nenu6g01128 Nenu-Chr6:38459639 dispersed
Nenu Nenu-Chr1:18370792 Nenu6g01128 Nenu-Chr6:38459639 wgd