AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin5g00389 ATGATGGCGGCTGGGGCTAGTAATCGAGTCCTCTTCTCGCCATCGTACTTGAGCTCACCATCACACCATGCATCCCGTTCTCTCTACCCTTACCTGAATTTACACACTAATCTATTCAGAAACCGAAGTTTTCCTTCAAAATTCCACCATCTCGCCCCAAAATCCTCATCGAACAGCAACAACATCTACAACAATGGCGGCGGCTGTGGCGGAAACGGAAACGGAAACAATCCCTTCCATTTCAGTGGCGGCTGGTGGTGGCCTGACGATGGCGGCGGCGGCGGCGGTTGGGACAATCGGTTATTATTATACTTGCTGTGCTCGTTGTGTGTTGTCGGAGCTGCAAGTGCAATTGTTGCCGAGGAAGACGAGAAAAGTGATGGGGAACAGATTGTTTGGAAAGTGAAACGAGGTAGCAGGACCAAACTCGTACCCGACGATTTCAGGGATGTGTTTGTGCTCCCGCACGATGAAACATTGTCTTCCTTGTCAAAATTGTCTTTCGAGGATGCGATTCCCAAAATCTGGTCTCAATGTAGGGATCTGTTCATGCGTTTGATGCTCCCTGAAGGGTTTCCGAACAGTGTTACCAGTGATTATTTGGAGTATTCTCTCTGGAGAAGCGTTCAAGGCGTTGCTGCTCAAATTAGTGCTGTTCTTGCCACCCAGTCTTTGCTTTATGCTGTTGGATTGGGGAAAGGGGCGATTCCGACGGCTGCGGCTGTGAATTGGGTGCTCAAGGATGGAATTGGGTATCTAAGCAAAATTCTTTTGTCGAAGTATGGTCGCCATTTTGACGTCAATCCAAAGGGTTGGAGGTTATTTGCCGATTTATTGGAAAACGCTGCATTCGGAATGGAAATCTTGACTCCTGCATTTCCACATCTCTTTGTTCCGATTGGTGCTGCTGCTGGAGCAGGAAGATCTGCAGCTTCACTGATACAGGCTGCTACCAGGAGCTGCTTCTATGCAGGTTTTGCTGCTCAGAGGAACTTTGCTGAGGTAATTGCAAAGGGTGAAGCTCAGGGTATGGTAAGCAAATCGATTGGAATCGTGCTCGGAATAGCATTAGCTAACTGCATACAATCTTCTACACCCCTTGTTCTTGCTTCCTTTGGTGTTATTACTTCGATCCACATGTTCTGCAATGTGAAGTCCTACCAGTCCATTCAACTGAGGACATTGAATCCTTACCGAGCAAGCTTGATCTTTGGTGAATACCTGCTCAGTGGCATTATACCTTCTGTTAAAGAGGTCAATGATGAAGAACCTTTTTTCCCCGCTGTACCACTTCTCGGTCTGAAGCCAGCCAACAAATCAGAACCTGGAGTACTATCAGCGGAAGCTAGGGATGCTGCTGCTATTATTGAGCGCCGACTGCAGCTAGGATTAAGGCTCTCTGATGTCGTTAAGACCAAAGAAGATGTGCTTGCATTGCTTGACCTCTACAGAGATGAAAATTATGTTTTGACGGAGCATGCCAATAGATATTGTGTGATACTGAAAGAGAGTTGCTCTCAAGAAGATATGCTAAAGTCGCTTTTCCAAGTGAGTTATCTTTACTGGTTGGAGAAAAACGTGGGACTAAAATCCGTGAGTACCGTTGAAGACTGCTGCCTTGGAGGAAGGCTGCAGATATCTCTGGAATATGCGGAGAGGGAATTCAACCACGCCAAAAGGGACGCGGAGCTGGCAGGTTGGACGACTGATGGTCTTATTGCAAAGCCACTACCACATAGAATTCATCCCATCTACATCTCCTCTGCTGCCAACTCCTGA 1779 47.22 MMAAGASNRVLFSPSYLSSPSHHASRSLYPYLNLHTNLFRNRSFPSKFHHLAPKSSSNSNNIYNNGGGCGGNGNGNNPFHFSGGWWWPDDGGGGGGWDNRLLLYLLCSLCVVGAASAIVAEEDEKSDGEQIVWKVKRGSRTKLVPDDFRDVFVLPHDETLSSLSKLSFEDAIPKIWSQCRDLFMRLMLPEGFPNSVTSDYLEYSLWRSVQGVAAQISAVLATQSLLYAVGLGKGAIPTAAAVNWVLKDGIGYLSKILLSKYGRHFDVNPKGWRLFADLLENAAFGMEILTPAFPHLFVPIGAAAGAGRSAASLIQAATRSCFYAGFAAQRNFAEVIAKGEAQGMVSKSIGIVLGIALANCIQSSTPLVLASFGVITSIHMFCNVKSYQSIQLRTLNPYRASLIFGEYLLSGIIPSVKEVNDEEPFFPAVPLLGLKPANKSEPGVLSAEARDAAAIIERRLQLGLRLSDVVKTKEDVLALLDLYRDENYVLTEHANRYCVILKESCSQEDMLKSLFQVSYLYWLEKNVGLKSVSTVEDCCLGGRLQISLEYAEREFNHAKRDAELAGWTTDGLIAKPLPHRIHPIYISSAANS 592
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin5g00389 592 PANTHER RUS1 FAMILY PROTEIN C16ORF58 125 582 IPR006968 GO:0009941(PANTHER)|GO:0010224(PANTHER)|GO:0032502(PANTHER)
Nin5g00389 592 Pfam Vitamin B6 photo-protection and homoeostasis 176 409 IPR054549 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin5g00389 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr2:3612621 Nin5g00389 Nin-Chr5:4624848 dispersed
Nin Nin-Chr3:40723129 Nin5g00389 Nin-Chr5:4624848 dispersed
Nin Nin-Chr4:10384535 Nin5g00389 Nin-Chr5:4624848 dispersed