AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pdy4g00482 | ATGGAAGACGATCAATACATCACCTCTCTCTCTCATCAAGATTCCGATCTCGATCTCAGCTTCACCACCACCACTTCCATCGCCACCACCAGTGCTCGCTCCAGTCTCGCTCGCTCCAGTTTATGTCTCAGTTTCAACGATTCCACCAGACTTTCCTCCGTCTCCGCGGCTACATCCTCTACTGAGATCCCTAACCTCCATTCTCGACCTCACCGGAAAGGTGATCCCGACTGGTCGGCGATTAGAGCCGCCACGAATCTCTCCTCTGACGGCACGCTTCACCTTCGCCACCTCAAGCTCGTCCGCCATGTCGGATCTGGAAATCTCGGCCGTGTGTTCCTTTGCAGGCTTCGTGATTATGATCACGCGAATTTTGCTTTGAAGGTTGTTGATAACAACTTGCTCACGTCGAAAAAGCTGTTACATGTGCAGACTGAGGCTAGAATCCTGTCCTCGCTAGACCACCCGTTCCTCCCTACGCTCTACGCGCACCTTGAGGTCTCTCACTACACTTGCTTCCTTATTGATTTCTGTCCAAACGGAGACCTACATTCCTTGCTCAGGAAGCAACCGAAATACCGGTTTCCGATCGATTCCGTTAGGTTCTTCGCGGCGGAGGTTCTGGTGGCGCTCGAGTACCTCCACTCGCTTGGGATTGTGTACCGTGACTTGAAACCGGAAAACATTTTGATCCGAGAAGACGGACATATTATGTTGTCGGATTTCGATTTATGCTTCACCGCCGACGTCGTACCGAAGCTTGATAACCGGATTCACTACCGGAAAACTAAAAAACAGAGTAACTGTTTCGGATTTCACGGCGGCCGTAGCGGAAGACGTGTTGAAGAAGAAACATTAACGGAGTTTGTAGCGGAACCGACGACGGCGTTTTCGAGATCATGCGTCGGGACTCACGAGTACCTGGCGCCGGAGTTGGTCAGTGGTAACGGCCACGGCAGCGGCGTCGACTGGTGGGCGTTGGGAGTGTTGATTTACGAGTTATTGTACGGAAAGACGCCGTTTAGGGGAGGGAGTAAGGAGTCAACCCTGCGCAATATAGCATCGACCACCGAAGTGAGGTTTGAACATGACGGAGAGAGCGGTAGAGGAATGGCGCAGGCTAAGGACTTGATACAACAGTTGCTAGTAAAAGATCCAAGCGAGCGGCTAGGGTGCGCCAGGGGTGCAACGGATATCAAACGGCACCCATTTTTCGACGGAATCAAATGGCCGTTAATCCGTATGTACCGTCCGCCGGAGGTGCGGGGGCTGACGGTGAAGAAGAGTGGCAGGGCGTATGGTAGTCACGTGGGCGGGTGGCCATCGTCCCACAAGAAAAGGCGTTCTGTATGGAAGGGGCTTAGTTGTATATTGTTGAAAAATAAGGGGTCAAAACGTAACTTAAATTTAAATCACAATTATTACCATTACCAAAATAGTACAGTTAGGAAATAG | 1455 | 51.27 | MEDDQYITSLSHQDSDLDLSFTTTTSIATTSARSSLARSSLCLSFNDSTRLSSVSAATSSTEIPNLHSRPHRKGDPDWSAIRAATNLSSDGTLHLRHLKLVRHVGSGNLGRVFLCRLRDYDHANFALKVVDNNLLTSKKLLHVQTEARILSSLDHPFLPTLYAHLEVSHYTCFLIDFCPNGDLHSLLRKQPKYRFPIDSVRFFAAEVLVALEYLHSLGIVYRDLKPENILIREDGHIMLSDFDLCFTADVVPKLDNRIHYRKTKKQSNCFGFHGGRSGRRVEEETLTEFVAEPTTAFSRSCVGTHEYLAPELVSGNGHGSGVDWWALGVLIYELLYGKTPFRGGSKESTLRNIASTTEVRFEHDGESGRGMAQAKDLIQQLLVKDPSERLGCARGATDIKRHPFFDGIKWPLIRMYRPPEVRGLTVKKSGRAYGSHVGGWPSSHKKRRSVWKGLSCILLKNKGSKRNLNLNHNYYHYQNSTVRK | 484 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pdy4g00482 | 484 | FunFam | Serine-threonine-protein kinase OXI1 | 296 | 423 | - | - | |
| Pdy4g00482 | 484 | FunFam | Serine-threonine-protein kinase OXI1 | 182 | 249 | - | - | |
| Pdy4g00482 | 484 | ProSitePatterns | Serine-Threonine protein kinases active-site signature. | 219 | 231 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Pdy4g00482 | 484 | SUPERFAMILY | Protein kinase-like (PK-like) | 83 | 421 | IPR011009 | - | |
| Pdy4g00482 | 484 | SMART | serkin-6 | 98 | 405 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Pdy4g00482 | 484 | Gene3D | Transferase(Phosphotransferase) domain 1 | 299 | 415 | - | - | |
| Pdy4g00482 | 484 | CDD | STKc-phototropin-like | 96 | 421 | - | - | |
| Pdy4g00482 | 484 | PANTHER | FLIPPASE KINASE 1-RELATED | 35 | 424 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
| Pdy4g00482 | 484 | Gene3D | Transferase(Phosphotransferase) domain 1 | 182 | 247 | - | - | |
| Pdy4g00482 | 484 | Gene3D | Phosphorylase Kinase; domain 1 | 97 | 181 | - | - | |
| Pdy4g00482 | 484 | ProSiteProfiles | Protein kinase domain profile. | 98 | 405 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Pdy4g00482 | 484 | Pfam | Protein kinase domain | 298 | 405 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Pdy4g00482 | 484 | Pfam | Protein kinase domain | 100 | 246 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pdy4g00482 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Pdy | Pdy-Chr4:8959369 | Pdy4g04173 | Pdy-Chr4:92915499 | dispersed | |
| Pdy | Pdy-Chr4:8959369 | Pdy7g00289 | Pdy-Chr7:6175446 | wgd | |
| Pdy | Pdy-Chr4:8959369 | Pdy7g01683 | Pdy-Chr7:59710967 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Pdy1g00583 | . | 250 | 934 | AGC Kinase gene family | AT3G52890 | 53.659 | 0.0 | 680.0 | |
| Pdy1g02411 | . | 1 | 468 | AGC Kinase gene family | AT3G08720 | 68.922 | 0.0 | 664.0 | |
| Pdy1g03152 | . | 3 | 996 | AGC Kinase gene family | AT3G45780 | 67.908 | 0.0 | 1377.0 | |
| Pdy1g04015 | . | 1 | 1294 | AGC Kinase gene family | AT3G17850 | 63.925 | 0.0 | 1527.0 | |
| Pdy1g04277 | . | 30 | 1164 | AGC Kinase gene family | AT5G62310 | 59.269 | 0.0 | 1315.0 | |
| Pdy1g04344 | . | 1 | 465 | AGC Kinase gene family | AT3G08720 | 68.511 | 0.0 | 635.0 | |
| Pdy1g04664 | . | 4 | 491 | AGC Kinase gene family | AT5G04510 | 77.393 | 0.0 | 790.0 | |
| Pdy2g02231 | . | 91 | 586 | AGC Kinase gene family | AT5G47750 | 80.952 | 0.0 | 810.0 | |
| Pdy2g03818 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 62.5 | 0.0 | 558.0 | |
| Pdy2g03962 | . | 16 | 395 | AGC Kinase gene family | AT3G20830 | 58.524 | 1.83e-152 | 435.0 | |
| Pdy3g00341 | . | 74 | 586 | AGC Kinase gene family | AT5G47750 | 75.81 | 0.0 | 781.0 | |
| Pdy3g01042 | . | 1 | 1009 | AGC Kinase gene family | AT1G45160 | 51.737 | 0.0 | 938.0 | |
| Pdy3g01365 | . | 135 | 429 | AGC Kinase gene family | AT3G08720 | 36.7 | 1.47e-48 | 179.0 | |
| Pdy3g02022 | . | 13 | 915 | AGC Kinase gene family | AT5G58140 | 70.37 | 0.0 | 1277.0 | |
| Pdy3g03026 | . | 96 | 586 | AGC Kinase gene family | AT5G47750 | 67.742 | 0.0 | 679.0 | |
| Pdy3g03192 | . | 134 | 234 | AGC Kinase gene family | AT5G58140 | 43.636 | 7.88e-21 | 95.5 | |
| Pdy4g00004 | . | 463 | 577 | AGC Kinase gene family | AT3G45780 | 48.696 | 3.19e-33 | 124.0 | |
| Pdy4g00482 | . | 10 | 469 | AGC Kinase gene family | AT3G14370 | 62.658 | 0.0 | 549.0 | |
| Pdy4g00986 | . | 114 | 586 | AGC Kinase gene family | AT5G47750 | 76.842 | 0.0 | 745.0 | |
| Pdy4g02442 | . | 140 | 356 | AGC Kinase gene family | AT3G08720 | 25.431 | 6.98e-14 | 71.2 | |
| Pdy4g02483 | ACH | 134 | 346 | AGC Kinase gene family | AT3G08730 | 23.83 | 1.91e-08 | 55.5 | |
| Pdy4g02818 | . | 135 | 233 | AGC Kinase gene family | AT5G58140 | 46.296 | 7.47e-22 | 98.6 | |
| Pdy4g03075 | . | 12 | 421 | AGC Kinase gene family | AT3G25250 | 56.086 | 9.52e-159 | 452.0 | |
| Pdy4g03457 | . | 1 | 517 | AGC Kinase gene family | AT2G20470 | 78.42 | 0.0 | 841.0 | |
| Pdy4g03695 | . | 99 | 765 | AGC Kinase gene family | AT2G44830 | 65.982 | 0.0 | 852.0 | |
| Pdy4g04173 | . | 4 | 438 | AGC Kinase gene family | AT2G34650 | 59.219 | 0.0 | 521.0 | |
| Pdy5g02382 | . | 1 | 564 | AGC Kinase gene family | AT2G20470 | 74.074 | 0.0 | 851.0 | |
| Pdy5g02494 | . | 5 | 386 | AGC Kinase gene family | AT3G25250 | 55.33 | 2.89e-151 | 432.0 | |
| Pdy6g00377 | . | 1 | 1288 | AGC Kinase gene family | AT3G17850 | 63.868 | 0.0 | 1523.0 | |
| Pdy6g02922 | . | 10 | 505 | AGC Kinase gene family | AT5G09890 | 76.506 | 0.0 | 813.0 | |
| Pdy6g03272 | . | 28 | 459 | AGC Kinase gene family | AT3G08720 | 56.222 | 3.14e-178 | 506.0 | |
| Pdy7g00289 | . | 1 | 934 | AGC Kinase gene family | AT3G52890 | 45.416 | 0.0 | 691.0 | |
| Pdy7g01683 | . | 10 | 469 | AGC Kinase gene family | AT3G14370 | 61.765 | 0.0 | 549.0 | |
| Pdy7g01877 | . | 4 | 518 | AGC Kinase gene family | AT4G33080 | 78.185 | 0.0 | 832.0 | |
| Pdy7g02436 | . | 11 | 525 | AGC Kinase gene family | AT2G26700 | 57.627 | 0.0 | 568.0 | |
| Pdy8g02284 | . | 1 | 499 | AGC Kinase gene family | AT5G40030 | 70.038 | 0.0 | 707.0 | |
| Pdy8g02348 | . | 90 | 578 | AGC Kinase gene family | AT3G27580 | 67.665 | 0.0 | 660.0 | |
| Pdy8g02449 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 64.331 | 0.0 | 551.0 | |
| Pdy8g02450 | . | 465 | 934 | AGC Kinase gene family | AT3G52890 | 61.229 | 0.0 | 576.0 | |
| Pdy8g02832 | . | 71 | 451 | AGC Kinase gene family | AT3G44610 | 58.961 | 1.02e-155 | 446.0 | |
| Pdy9g00138 | . | 40 | 263 | AGC Kinase gene family | AT5G04510 | 23.431 | 8.14e-10 | 61.2 | |
| Pdy9g03009 | . | 24 | 538 | AGC Kinase gene family | AT4G14350 | 83.366 | 0.0 | 905.0 | |
| Pdy9g03128 | . | 99 | 765 | AGC Kinase gene family | AT2G44830 | 69.027 | 0.0 | 884.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Pdy | Pkinase | 1e-55 | CL0016 | PK | AGC_RSK-2 |