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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00219 ATGTCTTCGTCTATGTTTTCTATGCGTGCCTCTAATGGCACCACATTAGCTCCTGAACAAAGAAAGATCTTTAGTGATTCAATATACAATAAGTCGGATTTTTTCCATAAGCATTTTCTTCGTTTCAAGGCTAATCATGTATCATCTAACCTGGAACACTCGAGTGTGTCACAAAAGGGTAGGATCCAATGTAGGGCGACAGAGGTGGAAAGTAACCGTACCTTTTTGAAGGGAGATAAATTTCAACTTCATGATGTGATTGAAGCGCAACAGTTTGATAGAGATATTCTGAGTGCGATATTTGAAGTGGCACGCGAAATGGAAATAATCGAGAAGAAGTCACGTGGAAGCCAGCTTTTGAATGGTTATCTAATGGCTACTCTCTTTTACGAGCCTTCAACTAGGACTAGGCTTTCATTTGAGTCAGCAATGAAGCGGTTGGGTGGGGAAGTTTTGACTACAGAAAATGCACGAGAGTTCTCTTCTGCTGCGAAAGGAGAAACACTTGAAGATACAATTAGAACGGTGGAAGGGTACACGGACATAATTGTGATGAGGCACTTTGAAGGTGGTGCTGCTAGAAGAGCAGCCATGACAGCTAACATTCCTGTTATTAATGCTGGTGATGGTCCAGGGCAGCATCCTACTCAGGCTCTACTCGATGTATACACTATTGAAAGAGAGATAGGAAAGCTGGATGGAATTAAAGTTGGACTAGTTGGGGATCTCGCTAATGGCCGAACAGTTCGCTCTCTTGCATATCTTTTAGCCAAATATAATGATGTGAAGATCTACTTTGTGTCACCAGAGGTTGTCAAGATGAAGGAGGACATTAAAGAGTACTTAACATCAAAAGGAGTCGAATGGGAAGAAAGTGCAGATCTAAAGGAGGTGGCATTGAAATGTGATGTGGTGTACCAGACCCGCATCCAGAGAGAACGTTTTGGGGAGAGAACCGATCTTTATGACGAAGCTCGTGGCAAGTACATTGTTGATCGAGAAGTCTTGAATGTCATGCAGAAGCATGCTGTTGTCATGCATCCACTCCCAAGGCTAGATGAGATAACCGTGGATGTAGATGGGGATCCGAGGGCCGCCTACTTTAGACAAGCGAAAAATGGACTATACATTAGGATGGCTTTGTTGAAGCTCTTACTTCTCGGTTGGTGA 1170 43.16 MSSSMFSMRASNGTTLAPEQRKIFSDSIYNKSDFFHKHFLRFKANHVSSNLEHSSVSQKGRIQCRATEVESNRTFLKGDKFQLHDVIEAQQFDRDILSAIFEVAREMEIIEKKSRGSQLLNGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYTDIIVMRHFEGGAARRAAMTANIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYNDVKIYFVSPEVVKMKEDIKEYLTSKGVEWEESADLKEVALKCDVVYQTRIQRERFGERTDLYDEARGKYIVDREVLNVMQKHAVVMHPLPRLDEITVDVDGDPRAAYFRQAKNGLYIRMALLKLLLLGW 389
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00219 389 FunFam Aspartate carbamoyltransferase 2 218 373 - -
Sain12g00219 389 Gene3D Aspartate-ornithine carbamoyltransferase 214 373 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Sain12g00219 389 Pfam Aspartate-ornithine carbamoyltransferase, Asp-Orn binding domain 233 384 IPR006131 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Sain12g00219 389 FunFam Aspartate carbamoyltransferase 85 217 - -
Sain12g00219 389 NCBIfam aspartate carbamoyltransferase 85 386 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Sain12g00219 389 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 79 386 - -
Sain12g00219 389 Pfam Aspartate-ornithine carbamoyltransferase, carbamoyl-P binding domain 85 226 IPR006132 GO:0006520(InterPro)|GO:0016743(InterPro)
Sain12g00219 389 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 351 374 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Sain12g00219 389 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 129 148 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Sain12g00219 389 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 214 225 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Sain12g00219 389 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 341 350 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Sain12g00219 389 Gene3D Aspartate-ornithine carbamoyltransferase 86 382 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Sain12g00219 389 Hamap Aspartate carbamoyltransferase [pyrB]. 83 388 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Sain12g00219 389 PRINTS Aspartate carbamoyltransferase signature 305 314 - -
Sain12g00219 389 PRINTS Aspartate carbamoyltransferase signature 213 230 - -
Sain12g00219 389 PRINTS Aspartate carbamoyltransferase signature 367 381 - -
Sain12g00219 389 PRINTS Aspartate carbamoyltransferase signature 159 168 - -
Sain12g00219 389 PRINTS Aspartate carbamoyltransferase signature 119 141 - -
Sain12g00219 389 PRINTS Aspartate carbamoyltransferase signature 345 350 - -
Sain12g00219 389 SUPERFAMILY Aspartate-ornithine carbamoyltransferase 81 386 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Sain12g00219 389 ProSitePatterns Aspartate and ornithine carbamoyltransferases signature. 129 136 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00219 K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:3969005 Sain14g01822 Sain-Chr14:57988019 dispersed