AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sain12g00473 | ATGGAAGACGATTTCCTCTGCCCTCAAGATTCCGATCTTGATCTCAGTTTCACAAGCTCCACCTCCATTGCCACCACTAGTGCTCGCTCCAGTCTAGCTCGTTCCAGTTTGTGTCTTAGTTTCAATGATTCTACTCGCATCTCCTCCGCCGCTTCATCCACTGCCGTTCCTAATCTCCACCCACGCCCTCACCGCAAATCTGATGCCAATTGGTCTGCTATCAGAGCCGCCACTAATCTCTCCTCCGACGGAACTCTCCACCTCCGCCACCTCAAGCTCGTTCGCCATGTCGGATCTGGAAATCTCGGCCGTGTGTTCCTTTGCCGTCTTCGGGATTACGATCACGCAAGTTTTGCTCTCAAAGTTGTTGATAACAACTCACTCACGTCGAAGAAGCTGTCACATGTGCAGACGGAGGCTCGGATCCTGTCGTCGCTAGACCACCCGTTCCTTCCTACACTCTACGCTCATTTGGAAGTCTCTCATTACACTTGCTTCCTCATTGATTTCTGTCCCAACGGAGACCTCCATTCCTTGATCCGCAAGCAACCTAATTACCGATTGCCGATTGATTCCGTTAGGTTCTTCGCCGCCGAGGTTTTGGTAGCGCTCGAATATCTCCACTCGCTTGGGATCGTGTACCGTGATTTGAAGCCGGAAAACATTTTGATCCGTGAAGACGGTCACATTATGTTGTCAGATTTCGATCTATGCTTCAACGCCGACGTCGTACCAAAGCTGGATAACCGGATTGAAGGCCGGATCTGTAAGAAACAATATCGTAGTTATTCCTGTTATTACGGCGGCGATAGGCGGAGAGATACAGAGGAAAAAACGATAACGGAGTTTGTAGCGGAGCCGACGACGGCTTTCTCGAGATCGTGTGTCGGAACTCACGAGTATTTGGCACCGGAGTTGATCACCGGCAATGGTCACGGTAGCGGTGTTGACTGGTGGGCGTTTGGAGTGTTGATTTACGAGTTATTGTACGGAAGGACGCCGTTTAGGGGAGGTAGTAAAGAGTCAACCCTGCGCAATATAGCATCGAGCACTGGAGTAAGGTTTGATGATGAGAGCACAAGAGGTATGGCGCAGGCTAAGGACTTGATAGAGAAGTTGTTGGTAAAAGATCCAAGGGAGCGGCTAGGGTGCGCCAGGGGTGCGACGGATATTAAAAAACACCCGTTCTTCGACGGCATCAAGTGGCCGTTGATCCGGATGTACCGGCCGCCGGAGGTGCGGGGGCTGGCGGTGAAGAGGAATAGTAGGGCGCACGTTAGTCACGTGAGCGGGTGGTCATCGTCCCACAAGAAAAGGCGTTGGTTATGGAAGGGTCTTACTTGTACAATTTTGAAAAATAAGGGGTCTAAACGTAACTTAAATTCCAACCAAAATTATTACCATTACAAAAAATAG | 1416 | 50.21 | MEDDFLCPQDSDLDLSFTSSTSIATTSARSSLARSSLCLSFNDSTRISSAASSTAVPNLHPRPHRKSDANWSAIRAATNLSSDGTLHLRHLKLVRHVGSGNLGRVFLCRLRDYDHASFALKVVDNNSLTSKKLSHVQTEARILSSLDHPFLPTLYAHLEVSHYTCFLIDFCPNGDLHSLIRKQPNYRLPIDSVRFFAAEVLVALEYLHSLGIVYRDLKPENILIREDGHIMLSDFDLCFNADVVPKLDNRIEGRICKKQYRSYSCYYGGDRRRDTEEKTITEFVAEPTTAFSRSCVGTHEYLAPELITGNGHGSGVDWWAFGVLIYELLYGRTPFRGGSKESTLRNIASSTGVRFDDESTRGMAQAKDLIEKLLVKDPRERLGCARGATDIKKHPFFDGIKWPLIRMYRPPEVRGLAVKRNSRAHVSHVSGWSSSHKKRRWLWKGLTCTILKNKGSKRNLNSNQNYYHYKK | 471 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sain12g00473 | 471 | SMART | serkin-6 | 91 | 397 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Sain12g00473 | 471 | ProSiteProfiles | Protein kinase domain profile. | 91 | 397 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Sain12g00473 | 471 | FunFam | Serine-threonine-protein kinase OXI1 | 175 | 243 | - | - | |
| Sain12g00473 | 471 | Pfam | Protein kinase domain | 93 | 240 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Sain12g00473 | 471 | Pfam | Protein kinase domain | 292 | 397 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Sain12g00473 | 471 | ProSitePatterns | Serine-Threonine protein kinases active-site signature. | 212 | 224 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Sain12g00473 | 471 | Gene3D | Transferase(Phosphotransferase) domain 1 | 292 | 407 | - | - | |
| Sain12g00473 | 471 | FunFam | Serine-threonine-protein kinase OXI1 | 290 | 415 | - | - | |
| Sain12g00473 | 471 | Gene3D | Phosphorylase Kinase; domain 1 | 90 | 174 | - | - | |
| Sain12g00473 | 471 | SUPERFAMILY | Protein kinase-like (PK-like) | 75 | 422 | IPR011009 | - | |
| Sain12g00473 | 471 | PANTHER | FLIPPASE KINASE 1-RELATED | 35 | 420 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
| Sain12g00473 | 471 | Gene3D | Transferase(Phosphotransferase) domain 1 | 175 | 240 | - | - | |
| Sain12g00473 | 471 | CDD | STKc-phototropin-like | 89 | 413 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sain12g00473 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Sain | Sain-Chr12:10347919 | Sain1g01091 | Sain-Chr1:82569067 | dispersed | |
| Sain | Sain-Chr12:10347919 | Sain3g00514 | Sain-Chr3:12920641 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Sain1g01091 | . | 4 | 438 | AGC Kinase gene family | AT2G34650 | 61.028 | 0.0 | 533.0 | |
| Sain2g00247 | . | 63 | 765 | AGC Kinase gene family | AT2G44830 | 65.963 | 0.0 | 881.0 | |
| Sain2g00605 | . | 1 | 538 | AGC Kinase gene family | AT4G14350 | 82.004 | 0.0 | 904.0 | |
| Sain3g00514 | . | 1 | 469 | AGC Kinase gene family | AT3G14370 | 60.164 | 0.0 | 541.0 | |
| Sain3g01670 | . | 4 | 518 | AGC Kinase gene family | AT4G33080 | 76.346 | 0.0 | 810.0 | |
| Sain3g02344 | . | 4 | 525 | AGC Kinase gene family | AT2G26700 | 57.439 | 0.0 | 574.0 | |
| Sain3g02427 | . | 40 | 263 | AGC Kinase gene family | AT5G04510 | 22.594 | 1.03e-10 | 63.9 | |
| Sain3g02998 | . | 1 | 468 | AGC Kinase gene family | AT3G08720 | 63.502 | 0.0 | 596.0 | |
| Sain3g03943 | . | 1 | 565 | AGC Kinase gene family | AT2G20470 | 73.333 | 0.0 | 845.0 | |
| Sain3g04091 | . | 5 | 386 | AGC Kinase gene family | AT3G25250 | 56.709 | 1.77e-153 | 438.0 | |
| Sain4g00089 | . | 119 | 519 | AGC Kinase gene family | AT5G58140 | 30.952 | 1.69e-57 | 200.0 | |
| Sain4g01269 | . | 3 | 491 | AGC Kinase gene family | AT5G04510 | 76.673 | 0.0 | 786.0 | |
| Sain4g01747 | . | 1 | 459 | AGC Kinase gene family | AT3G08720 | 68.817 | 0.0 | 622.0 | |
| Sain4g01871 | . | 30 | 1166 | AGC Kinase gene family | AT5G62310 | 59.444 | 0.0 | 1315.0 | |
| Sain4g02301 | . | 244 | 1293 | AGC Kinase gene family | AT3G17850 | 71.123 | 0.0 | 1513.0 | |
| Sain7g00397 | . | 739 | 910 | AGC Kinase gene family | AT5G58140 | 82.558 | 1.39e-100 | 309.0 | |
| Sain7g00398 | . | 731 | 910 | AGC Kinase gene family | AT5G58140 | 80.556 | 2.96e-100 | 308.0 | |
| Sain7g00399 | . | 62 | 910 | AGC Kinase gene family | AT5G58140 | 72.032 | 0.0 | 1268.0 | |
| Sain7g00811 | . | 10 | 504 | AGC Kinase gene family | AT5G09890 | 76.768 | 0.0 | 815.0 | |
| Sain7g01447 | . | 28 | 459 | AGC Kinase gene family | AT3G08720 | 56.889 | 1.88e-177 | 504.0 | |
| Sain8g00151 | . | 1 | 1295 | AGC Kinase gene family | AT3G17850 | 63.418 | 0.0 | 1533.0 | |
| Sain8g01418 | . | 4 | 485 | AGC Kinase gene family | AT3G10540 | 76.907 | 0.0 | 773.0 | |
| Sain8g01833 | . | 112 | 555 | AGC Kinase gene family | AT1G79250 | 72.867 | 0.0 | 673.0 | |
| Sain8g02148 | . | 71 | 578 | AGC Kinase gene family | AT3G27580 | 66.922 | 0.0 | 673.0 | |
| Sain9g00056 | . | 74 | 586 | AGC Kinase gene family | AT5G47750 | 77.143 | 0.0 | 801.0 | |
| Sain9g00901 | . | 1 | 991 | AGC Kinase gene family | AT1G45160 | 50.629 | 0.0 | 912.0 | |
| Sain9g02343 | . | 63 | 586 | AGC Kinase gene family | AT5G47750 | 77.82 | 0.0 | 833.0 | |
| Sain10g02484 | . | 16 | 395 | AGC Kinase gene family | AT3G20830 | 59.794 | 1.92e-159 | 453.0 | |
| Sain10g02645 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 63.383 | 0.0 | 530.0 | |
| Sain10g04981 | . | 134 | 234 | AGC Kinase gene family | AT5G58140 | 43.636 | 2.14e-20 | 94.4 | |
| Sain11g00277 | . | 30 | 1159 | AGC Kinase gene family | AT5G62310 | 59.025 | 0.0 | 1325.0 | |
| Sain11g01000 | . | 71 | 421 | AGC Kinase gene family | AT3G44610 | 59.444 | 3.35e-154 | 443.0 | |
| Sain11g01398 | . | 16 | 395 | AGC Kinase gene family | AT3G20830 | 59.269 | 2.03e-152 | 434.0 | |
| Sain11g01535 | . | 368 | 901 | AGC Kinase gene family | AT3G52890 | 55.354 | 0.0 | 574.0 | |
| Sain11g01537 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 65.171 | 0.0 | 561.0 | |
| Sain11g01692 | . | 98 | 544 | AGC Kinase gene family | AT5G47750 | 72.284 | 0.0 | 659.0 | |
| Sain11g01778 | . | 70 | 499 | AGC Kinase gene family | AT5G40030 | 78.132 | 0.0 | 703.0 | |
| Sain12g00204 | . | 89 | 586 | AGC Kinase gene family | AT5G47750 | 74.502 | 0.0 | 746.0 | |
| Sain12g00473 | . | 3 | 469 | AGC Kinase gene family | AT3G14370 | 61.169 | 0.0 | 555.0 | |
| Sain12g01946 | . | 1 | 466 | AGC Kinase gene family | AT3G08720 | 67.722 | 0.0 | 652.0 | |
| Sain13g00109 | . | 40 | 263 | AGC Kinase gene family | AT5G04510 | 21.097 | 1.55e-08 | 57.0 | |
| Sain13g00896 | ACH | 135 | 233 | AGC Kinase gene family | AT5G58140 | 43.519 | 2.08e-20 | 94.0 | |
| Sain13g01289 | . | 160 | 373 | AGC Kinase gene family | AT2G20470 | 75.814 | 1.54e-117 | 345.0 | |
| Sain14g00230 | . | 1 | 934 | AGC Kinase gene family | AT3G52890 | 48.62 | 0.0 | 750.0 | |
| Sain14g02514 | . | 88 | 586 | AGC Kinase gene family | AT5G47750 | 67.525 | 0.0 | 652.0 | |
| Sain14g02526 | . | 135 | 379 | AGC Kinase gene family | AT3G08720 | 38.462 | 1.36e-46 | 173.0 | |
| Sain15g00774 | . | 5 | 996 | AGC Kinase gene family | AT3G45780 | 67.142 | 0.0 | 1372.0 | |
| Sain16g00072 | . | 5 | 373 | AGC Kinase gene family | AT3G25250 | 60.422 | 1.89e-158 | 451.0 | |
| Sain16g00167 | . | 1 | 517 | AGC Kinase gene family | AT2G20470 | 79.191 | 0.0 | 852.0 | |
| Sain16g01064 | ACH | 135 | 233 | AGC Kinase gene family | AT5G58140 | 44.444 | 4.00e-21 | 96.3 | |
| Sain10001008.1g00001 | . | 1 | 934 | AGC Kinase gene family | AT3G52890 | 46.875 | 0.0 | 739.0 | |
| Sain10001245.1g00001 | . | 1 | 934 | AGC Kinase gene family | AT3G52890 | 47.853 | 0.0 | 738.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Sain | Pkinase | 3.9e-34 | CL0016 | PK | AGC_RSK-2 |