AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00081 ATGCTGGATGTGGATCGAAAATCGAATGAGAGTAGCAATGGTGGCGATCGAATAAAGAAGAACAAAAACAACAAATGGAAGCGGTGGGGAGTTATCACATCTGTGATTGCAGTTTTAGTTGCCGTGTATCTTGATCCATGGCACCATTTTCTCAGTTATTCATTCCTCCATAAATCCTCCATATGTTCTAAGGATACTTGTGAAAATACAGGCATAGTTGAGGAATGCTGTTGTGATTATGAGAGCGTTAATGATATTAATGGGGCAGTTTTACATCCCTTATTACAAGAGCTTGTTCAGACCCCTTTCTTTAGATACTTCAAGGTTAAGTTATGGTGTGATTGCCCGTTCTGGCCCGATGATGGCATGTGCCGCCTGCGGGATTGCAGTGTATGCGAGTGTCCAGAACATGAATTTCCAGAATCTTTTAGAAAGCCAAAAGATGACCCTGTGTGTCAAGAGGGAAAGCCTGAGGCTGCTGTTGACCGAACCCTAGATGCTAAATCGTTTAGAGGCTGGGTAGAAATTGATAATCCATGGACTCTGGATGATGAAACTGATAATGGTGAAATGACGTATGTAAATCTGCAACTGAATGCTGAACGTCATACGGGGTATACAGGGCCATCAGAAAGAAGAATATGGGATGCTATATACTCGGAAAATTGTCCAAGATATGCATATGGAGAGACGTGCCCGGAGAAGAAAGTACTATACAAACTAATATCTGGTCTACACTCCTCGATTTCTAGCCATATTGCTGCTGATTATCTCCTTGATGAGACTACCAATAAGTGGGGTTCAAATCTTCGATTGATGCATGATCGTGTCTTGAAACATTTTGATCGCGTGGAAAATTTGTACTTCACTTTCCTATTTGTTCTTAGAGCTGTGACAAAAGCAGCTTCCTATTTGGATCAAGCTGAGTATGACTCTGGTAACCATGTGGAGGATTTGAGAGCTCAATTCTTGATTCGACAACTGGTTCACGATTCTAAATTGCAAGATGCGTGTGCTCTTCCATTTGATGAGGCTGAACTGTGGCAAGGCCAAGGTGGGCCCATACTCAGGCAGCAGATTCAAAATCAATTTCGGAACATCAGTGCACTCATGGACTGTGTAGGGTGTGAGAAGTGTCGTCTTTGGGGAAAACTTCAAGTTCTTGGGCTTGGAACTTCATTACAAATTCTCTTCTCTGTTGATGATCAGGGAAACCCGGACCCACACCTGCAGTTACAGAGAAATGAAGTGATTGCTCTAATTAATCTACTAAATCGGCTATCGGAATCTCTTATATTTGTTACCAAAACGAGAGATACGGGTGCTATAAGCCGTCTTGCTAACGAAATCGGTTTAATTCGCAAACAATGGGGATCATCAATAGCTCATTGGTACAGCTTTGCTGCTAACAGTTCATCTTTTTTTTGGCTTTAA 1434 41.98 MLDVDRKSNESSNGGDRIKKNKNNKWKRWGVITSVIAVLVAVYLDPWHHFLSYSFLHKSSICSKDTCENTGIVEECCCDYESVNDINGAVLHPLLQELVQTPFFRYFKVKLWCDCPFWPDDGMCRLRDCSVCECPEHEFPESFRKPKDDPVCQEGKPEAAVDRTLDAKSFRGWVEIDNPWTLDDETDNGEMTYVNLQLNAERHTGYTGPSERRIWDAIYSENCPRYAYGETCPEKKVLYKLISGLHSSISSHIAADYLLDETTNKWGSNLRLMHDRVLKHFDRVENLYFTFLFVLRAVTKAASYLDQAEYDSGNHVEDLRAQFLIRQLVHDSKLQDACALPFDEAELWQGQGGPILRQQIQNQFRNISALMDCVGCEKCRLWGKLQVLGLGTSLQILFSVDDQGNPDPHLQLQRNEVIALINLLNRLSESLIFVTKTRDTGAISRLANEIGLIRKQWGSSIAHWYSFAANSSSFFWL 477
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00081 477 SUPERFAMILY ERO1-like 78 439 IPR037192 -
Smso7g00081 477 PANTHER ERO1-RELATED 33 440 IPR007266 GO:0005783(InterPro)|GO:0005789(PANTHER)|GO:0015035(InterPro)|GO:0015035(PANTHER)|GO:0016972(InterPro)|GO:0034975(PANTHER)|GO:0034975(InterPro)|GO:0071949(InterPro)
Smso7g00081 477 Pfam Endoplasmic Reticulum Oxidoreductin 1 (ERO1) 91 431 IPR007266 GO:0005783(InterPro)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(InterPro)|GO:0071949(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00081 K10950 ERO1-like protein alpha [EC:1.8.4.-]
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Event-related genes

Select Gene_1 Gene_2 Event_name
148166 Smso18g01568 Smso7g00081
154167 Smso7g00081 Smso9g00685
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr1:91012577 Smso7g00081 Smso-Chr7:1685084 wgd
Smso Smso-Chr18:73663253 Smso7g00081 Smso-Chr7:1685084 wgd
Smso Smso-Chr25:15980147 Smso7g00081 Smso-Chr7:1685084 wgd
Smso Smso-Chr29:1777780 Smso7g00081 Smso-Chr7:1685084 wgd
Smso Smso-Chr7:1685084 Smso9g00685 Smso-Chr9:15968957 wgd