Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Smso7g00618	ATGCCAAAGGTTTCGCTTTGGGATTTGCCTGACCTGCCTCAGAATCAGCTTCCTCCACACCTGCAACTCCAGAAAACTCGCGTCGTCTGCAACAACGATGCTCCTACTAATGTACGATCTACGGAGAATATAACCTACTCCGGTGCATATGCGGCAATCGGAGTTGATAACAGCTTAAGGTTGGATGAATTTAGGAAAAACTTCAAAGTCAAAGTGATTAAGCTCAGTGAAGAAGACATGGAGTTTGATTTGATTGGAATTGATGCTTCTATTGCGAATGCTTTTAGAAGAATCCTCATATCTGAGGTGCCCACTATGGCTATTGAGAAGGTTCTTGTTGCAAACAGTTCAACAGTGGTACAAGATGAAGTACTTGCCCACCGTTTGGGTCTCATTCCAATAAAAGTCGATCCAAGGCTGTTCGATTATATGTCAGAAAATGATGTTCCTAATGAGAAAAATACCATTGTTTTTAAACTCGATTTCAAGTGTGAGCGAAAATCTGGCGAACGTCGCACAGTGTACTCTCATGATCTTAAGTGGTTGCCATTTGGCAGTGAGTATGTGCTCTCCACTGAAAATTCTTCAGATCCCACATCAAAACCAAAAACATACACATCATTTACCTCCAGTCAGGACTCCTTGCCAGAATTTTCAAATAATCCTATCACTGTCACTCCTGGTATCATTATATCAAAGCTTGCACCTGGGCAGGAAATTGAGTTAGAAGCACATGCTGTTAAAGGCCTTGGTAAAACGCATGCCAAGTGGTCTCCTGTTGCCACTGCTTGGTACCGAATGCTCCCTGAGGTTGTATTGCTGCAAGATATTGAGGATGAGGATGCTCAGAAACTTGTAAACAAATGCCCAGTTAATGTGTTTGACATTGAAGATGTGGGTAAAGGTGTTAAGAGGGCAACTGTGGCTAGACCAAGAGCCTGTACCCTGTGTAGGGAATGCATCAGAGAGCCCGGATGGGAGGAAAAAGTGGCACTAAGACGCGTGAAAGATCATTTTATCTTCACTATTGAATCAACTGGAGCATTGCCACCTGAAGTGCTATTTTCTGAAGCAGTCAAGATTTTAGAAGACAAGTGTGAAAGTGTTATAACTGAGCTCTCATAG	1125	42.67	MPKVSLWDLPDLPQNQLPPHLQLQKTRVVCNNDAPTNVRSTENITYSGAYAAIGVDNSLRLDEFRKNFKVKVIKLSEEDMEFDLIGIDASIANAFRRILISEVPTMAIEKVLVANSSTVVQDEVLAHRLGLIPIKVDPRLFDYMSENDVPNEKNTIVFKLDFKCERKSGERRTVYSHDLKWLPFGSEYVLSTENSSDPTSKPKTYTSFTSSQDSLPEFSNNPITVTPGIIISKLAPGQEIELEAHAVKGLGKTHAKWSPVATAWYRMLPEVVLLQDIEDEDAQKLVNKCPVNVFDIEDVGKGVKRATVARPRACTLCRECIREPGWEEKVALRRVKDHFIFTIESTGALPPEVLFSEAVKILEDKCESVITELS	374

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Smso7g00618	374	Pfam	RNA polymerase Rpb3-RpoA insert domain	125	256	IPR011262	GO:0003899(InterPro)\|GO:0006351(InterPro)\|GO:0046983(InterPro)
	Smso7g00618	374	MobiDBLite	consensus disorder prediction	191	213	-	-
	Smso7g00618	374	Pfam	RNA polymerase Rpb3-Rpb11 dimerisation domain	81	366	IPR011263	GO:0003899(InterPro)\|GO:0006351(InterPro)
	Smso7g00618	374	Hamap	DNA-directed RNA polymerase subunit Rpo3 [rpo3].	69	373	IPR022842	GO:0003899(InterPro)\|GO:0006351(InterPro)
	Smso7g00618	374	SUPERFAMILY	RBP11-like subunits of RNA polymerase	66	373	IPR036603	GO:0006351(InterPro)\|GO:0046983(InterPro)
	Smso7g00618	374	CDD	RNAP-I-II-AC40	68	372	IPR033901	GO:0001054(InterPro)\|GO:0001056(InterPro)
	Smso7g00618	374	SMART	rpoldneu2	79	372	IPR011263	GO:0003899(InterPro)\|GO:0006351(InterPro)
	Smso7g00618	374	PANTHER	DNA-DIRECTED RNA POLYMERASE	23	374	IPR050518	GO:0001054(PANTHER)\|GO:0001056(PANTHER)\|GO:0003899(PANTHER)\|GO:0005666(PANTHER)\|GO:0005736(PANTHER)
	Smso7g00618	374	Gene3D	-	70	365	IPR036603	GO:0006351(InterPro)\|GO:0046983(InterPro)
	Smso7g00618	374	SUPERFAMILY	Insert subdomain of RNA polymerase alpha subunit	104	259	IPR036643	-
	Smso7g00618	374	Gene3D	-	105	255	IPR036643	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Smso7g00618	K03027	DNA-directed RNA polymerases I and III subunit RPAC1

Event-related genes

Select	Gene_1	Gene_2	Event_name
	337208	Smso29g00764	Smso7g00618
	353908	Smso7g00618	Smso29g00764

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Smso	Smso-Chr7:10689684	Smso9g00847	Smso-Chr9:22068060	dispersed
	Smso	Smso-Chr29:11321538	Smso7g00618	Smso-Chr7:10689684	wgd