AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Soca5g05330 | ATGAAAGACAGTTCTAGCAGTGGTGGTGGCGGCGGAGGAAGAAAGCAAGGCGCAGCGTCACCGTGTGCAGCGTGCAAGCTTTTGCGACGCAGATGCTCTCACGATTGTGTTTTTGCTCCCTACTTCCCTGCAGACGAACCTCACAAATTCGCTAGTGTTCATAAAGTCTTTGGTGCTAGCAATGTTAACAAGATGCTCCAGGAATTACCGGAGCATCATAGAGGGGACGCGGTGAGTTCAATGGTGTACGAAGCCAATGCTAGGATCAGGGATCCGGTGTATGGTTGTGTAGGCGCTATATCGTCCCTACAACAACAAATAGACGTACTTCAAGCACAATTGGCCTTGTCACAGGCCGAGGTTGTTCACATGAGAATGCGCCAGTATTCATCGAGTCCTGCAAACCAATCGCCCGAAAACATCTCACCTCAATCTCGACACCACCCATCTCAAACACCAACAAGGTCCCTTTTTGGCATGGACATGGTGGTTGACCAAACTAATATGGGCATGGGGGAGTCCTTATGGTCCTCATAA | 537 | 49.72 | MKDSSSSGGGGGGRKQGAASPCAACKLLRRRCSHDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHHRGDAVSSMVYEANARIRDPVYGCVGAISSLQQQIDVLQAQLALSQAEVVHMRMRQYSSSPANQSPENISPQSRHHPSQTPTRSLFGMDMVVDQTNMGMGESLWSS | 178 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Soca5g05330 | 178 | Coils | Coil | 100 | 120 | - | - | |
| Soca5g05330 | 178 | ProSiteProfiles | LOB domain profile. | 20 | 121 | IPR004883 | - | |
| Soca5g05330 | 178 | MobiDBLite | consensus disorder prediction | 128 | 155 | - | - | |
| Soca5g05330 | 178 | Pfam | Lateral organ boundaries (LOB) domain | 21 | 118 | IPR004883 | - | |
| Soca5g05330 | 178 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 19 | 145 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Soca5g05330 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Soca | Soca-Chr3:7469687 | Soca5g05330 | Soca-Chr5:73269980 | dispersed | |
| Soca | Soca-Chr5:73269980 | Soca6g01462 | Soca-Chr6:19535750 | dispersed | |
| Soca | Soca-Chr5:73269980 | Soca3g01108 | Soca-Chr3:10679485 | transposed | |
| Soca | Soca-Chr5:73269980 | Soca1g04400 | Soca-Chr1:52604352 | transposed | |
| Soca | Soca-Chr5:73269980 | Soca8g04591 | Soca-Chr8:72076546 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Soca2g06361 | . | 20 | 220 | AS2 family | AT4G00220 | 62.264 | 1.44e-75 | 227.0 | |
| Soca3g00802 | . | 52 | 117 | AS2 family | AT2G30130 | 84.848 | 2.96e-35 | 119.0 | |
| Soca9g02429 | . | 24 | 110 | AS2 family | AT1G06280 | 62.069 | 3.22e-35 | 122.0 | |
| Soca8g04105 | . | 11 | 214 | AS2 family | AT3G58190 | 51.57 | 2.19e-66 | 202.0 | |
| Soca8g04104 | . | 7 | 245 | AS2 family | AT2G42430 | 52.697 | 2.28e-68 | 207.0 | |
| Soca1g00393 | . | 1 | 79 | AS2 family | AT3G26660 | 64.557 | 5.15e-38 | 122.0 | |
| Soca1g00465 | . | 1 | 107 | AS2 family | AT3G26660 | 63.551 | 5.28e-51 | 156.0 | |
| Soca6g01462 | . | 3 | 193 | AS2 family | AT2G30130 | 64.767 | 1.40e-79 | 232.0 | |
| Soca6g03163 | . | 1 | 112 | AS2 family | AT3G49940 | 69.027 | 1.29e-53 | 169.0 | |
| Soca6g00726 | . | 7 | 245 | AS2 family | AT2G42430 | 49.583 | 5.43e-63 | 194.0 | |
| Soca6g00727 | ACH | 1 | 113 | AS2 family | AT2G42440 | 79.646 | 2.76e-64 | 198.0 | |
| Soca8g03944 | ACH | 11 | 214 | AS2 family | AT3G58190 | 51.121 | 9.41e-66 | 201.0 | |
| Soca8g03943 | . | 7 | 245 | AS2 family | AT2G42430 | 52.697 | 2.28e-68 | 207.0 | |
| Soca7g02186 | . | 1 | 124 | AS2 family | AT5G06080 | 60.484 | 9.51e-49 | 155.0 | |
| Soca7g01176 | . | 5 | 113 | AS2 family | AT3G26660 | 59.633 | 4.12e-48 | 149.0 | |
| Soca7g01046 | . | 3 | 198 | AS2 family | AT1G65620 | 64.602 | 9.35e-80 | 235.0 | |
| Soca6g03248 | . | 1 | 112 | AS2 family | AT3G49940 | 70.536 | 1.05e-54 | 171.0 | |
| Soca6g03249 | . | 1 | 112 | AS2 family | AT3G49940 | 69.912 | 3.17e-54 | 170.0 | |
| Soca4g00629 | . | 1 | 244 | AS2 family | AT5G66870 | 57.661 | 2.05e-82 | 250.0 | |
| Soca5g05330 | . | 6 | 171 | AS2 family | AT1G31320 | 65.909 | 2.23e-70 | 209.0 | |
| Soca4g02777 | . | 27 | 140 | AS2 family | AT3G47870 | 53.913 | 6.82e-38 | 131.0 | |
| Soca4g02863 | . | 1 | 124 | AS2 family | AT5G63090 | 87.097 | 1.57e-74 | 221.0 | |
| Soca5g00451 | . | 40 | 246 | AS2 family | AT2G45420 | 59.242 | 8.63e-74 | 223.0 | |
| Soca7g02087 | . | 7 | 124 | AS2 family | AT5G06080 | 62.712 | 1.11e-48 | 155.0 | |
| Soca6g03596 | . | 35 | 246 | AS2 family | AT3G13850 | 45.276 | 8.43e-57 | 185.0 | |
| Soca6g03598 | ACH | 35 | 246 | AS2 family | AT3G13850 | 45.276 | 6.48e-57 | 185.0 | |
| Soca6g03597 | . | 35 | 246 | AS2 family | AT3G13850 | 45.276 | 8.23e-57 | 184.0 | |
| Soca5g03148 | ACH | 1 | 115 | AS2 family | AT5G67420 | 73.043 | 1.52e-62 | 192.0 | |
| Soca7g03175 | . | 1 | 258 | AS2 family | AT5G66870 | 49.653 | 5.23e-78 | 239.0 | |
| Soca7g03174 | . | 1 | 258 | AS2 family | AT5G66870 | 49.653 | 5.23e-78 | 239.0 | |
| Soca3g02041 | . | 1 | 239 | AS2 family | AT4G37540 | 55.417 | 1.54e-76 | 228.0 | |
| Soca7g03755 | . | 1 | 117 | AS2 family | AT4G37540 | 70.94 | 3.07e-57 | 176.0 | |
| Soca7g00602 | . | 27 | 140 | AS2 family | AT3G47870 | 54.783 | 1.36e-38 | 135.0 | |
| Soca6g00811 | . | 7 | 245 | AS2 family | AT2G42430 | 50.413 | 3.04e-62 | 191.0 | |
| Soca6g00812 | ACH | 1 | 113 | AS2 family | AT2G42440 | 80.531 | 4.59e-65 | 200.0 | |
| Socaptg000718l_1g00357 | . | 1 | 244 | AS2 family | AT5G66870 | 57.937 | 6.74e-83 | 251.0 | |
| Soca6g03476 | ACH | 35 | 246 | AS2 family | AT3G13850 | 44.922 | 6.36e-57 | 184.0 | |
| Soca9g01522 | ACH | 1 | 132 | AS2 family | AT3G49940 | 71.97 | 2.15e-66 | 202.0 | |
| Soca9g00360 | ACH | 35 | 182 | AS2 family | AT3G13850 | 51.316 | 2.54e-44 | 147.0 | |
| Soca4g03320 | . | 33 | 151 | AS2 family | AT3G27650 | 77.311 | 1.63e-66 | 197.0 | |
| Soca3g02571 | . | 4 | 108 | AS2 family | AT2G30130 | 28.571 | 1.61e-06 | 43.5 | |
| Soca3g01959 | . | 3 | 247 | AS2 family | AT5G66870 | 52.439 | 3.32e-75 | 230.0 | |
| Soca1g05795 | . | 5 | 113 | AS2 family | AT3G26660 | 58.716 | 3.37e-47 | 147.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Soca | LOB | 3.5e-43 | No_clan | TF | LOB |