AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04413 ATGGATGCTTCAAGAATCTCATCTATTTGCTTCGATATGGAATCAATAGGGCTTGAAAACGACATCTCGGGCTCAAAAACATATTGTAATCTTGGACTAAAACAAACATCTAAACAAAATAATGGTAACCCGAAAGTTTTATCACTTCTTTCATCAATTCTTGAGAGATCCGTGCAAATGAACGAGACATTACTCGAGAAAACACAAACTAAAGATGTTATTACGGTTTTTCACGGTTCAAAAGCACCAACACTTACCATTAAAGAGTATATCGATAGAATATTCAAGTACTCGCGTTGCAGCCCCTCGTGTTTTGTCGTTGCACAAGTTTACTTGGATCGTTTTATTCAGTGTGGAAATGTTAATTTGACTTCTCTTAGTGTTCATCGACTTCTCATCACTAGTATAATGCTTGCGGCCAAGTTTATTGATGACGCATTCTACAACAACGCGTATTATGCAAAAGTTGGAGGAGTAACAACTGCAGAATTAAACCGACTGGAGATGAAATTCCTGTTTGGTCTGGACTTTCGGCTCCACGTCAGCCTTCGTACGTTTGGCAGATATTGTTCGCAGTTGGAAAAACAAGTTTTATGTGATATCCAAGTGGAAAGACCGCCACGGGTGATTCACGCCCCGTGTGGACTCAAAGAAACCTGGTCCAGTAGTGATGACTCGAGTCCTTATGCGACAACAGAGATACATATTGTGTAG 714 40.06 MDASRISSICFDMESIGLENDISGSKTYCNLGLKQTSKQNNGNPKVLSLLSSILERSVQMNETLLEKTQTKDVITVFHGSKAPTLTIKEYIDRIFKYSRCSPSCFVVAQVYLDRFIQCGNVNLTSLSVHRLLITSIMLAAKFIDDAFYNNAYYAKVGGVTTAELNRLEMKFLFGLDFRLHVSLRTFGRYCSQLEKQVLCDIQVERPPRVIHAPCGLKETWSSSDDSSPYATTEIHIV 237
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04413 237 Pfam Cyclin 61 179 IPR013922 GO:0000079(InterPro)|GO:0019901(InterPro)
Stre1g04413 237 SUPERFAMILY Cyclin-like 89 180 IPR036915 -
Stre1g04413 237 Gene3D - 35 208 - -
Stre1g04413 237 PANTHER UNCHARACTERIZED 30 220 IPR013922 GO:0000079(InterPro)|GO:0019901(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04413 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
159178 Stre1g04413 Stre8g00386
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr1:130887454 Stre4g00713 Stre-Chr4:66908334 dispersed
Stre Stre-Chr11:98468841 Stre1g04413 Stre-Chr1:130887454 transposed
Stre Stre-Chr1:130887454 Stre8g00386 Stre-Chr8:7759019 wgd