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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako4g03048 ATGGCATCCGCCTTTCTTTCAAGAACTCTCTTTGCACATCGTTTCGTCTCTTCCTTCGCCCTCACTCCAAAACCCCAAAAATTAGCGCCCCTGTTCTTCAGGAAACCTCTTCACTCGTGGGCTTCCCCATCGCATACGGTGTACCGGAGACTAAACATAGTTCGTAGTGACATGGCTTCTACCGTAATCGGATCTACATCTTCTTTTTCAACACAATCCATGTCAACTAGCGAGCCTGTCGTTTCAGTCGACTGGCTTCACGCCAATCTACGCGAGCCTGATATGAAGGTCCTCGATGCATCCTGGTACATGCCTGATGAACAACGAAACCCACTTCAAGAGTATCAGGTTGCCCACATCCCTGGTGCTCTTTTCTTTGATGTAGATGGGATATCTGATCGCACTACTAATCTGCCACATATGTTGCCATCTGAAGAAGCATTTGCTGCTGCTGTTTCTGCTCTTGGTATTGAAAACAAAGATGGAGTTGTTGTCTATGATGGTAAAGGCATCTTCAGTGCTGCTCGTGTCTGGTGGATGTTTCGAGTGTTTGGACATGATAGAGTATGGGTGTTAGATGGAGGGTTGCCTAGGTGGCGAGCATCTGGTTTTGATGTTGAGTCAAGTGCTTCAAGTGATGCAATTTTGAAAGCTAGTGCTGCCAGCGAGGCGATAGAAAAAGTATACCATGGACAAGCTGTTGGTCCGGTTACATTTCAAACAAGATTTCAGTCGCATCTTGTTTGGACACTTGAACAGGTTAAGAAGAATATAGAAGACCAAACATATCAACACATAGATGCAAGGTCAAAGGCCAGGTTTGATGGTGTTGCAGCCGAACCTAGAAAAGGAATAAGAAGTGGTCATGTGCCTGGAAGCAAGTGCATTCCTTTTGCGCAGATGTTGGATAGCCAACAGTCATTACTATCAGCAGACCAACTTAAGAAAAAGTTTGAACAAGAGGGTCTCTCATTGGAGGAACCTGTTTTGGCTTCATGTGGCACGGGAGTTACCGCGTGCATTCTCGCATTGGGACTCCATCGACTTGGGAAGAGAGATGTCCCGGTTTATGATGGATCATGGACCGAATGGGGAGCACAAGAAGATACTCCTGTCTCAACTTCAACTTCAACTTCAACTTGA 1143 45.93 MASAFLSRTLFAHRFVSSFALTPKPQKLAPLFFRKPLHSWASPSHTVYRRLNIVRSDMASTVIGSTSSFSTQSMSTSEPVVSVDWLHANLREPDMKVLDASWYMPDEQRNPLQEYQVAHIPGALFFDVDGISDRTTNLPHMLPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGFDVESSASSDAILKASAASEAIEKVYHGQAVGPVTFQTRFQSHLVWTLEQVKKNIEDQTYQHIDARSKARFDGVAAEPRKGIRSGHVPGSKCIPFAQMLDSQQSLLSADQLKKKFEQEGLSLEEPVLASCGTGVTACILALGLHRLGKRDVPVYDGSWTEWGAQEDTPVSTSTSTST 380
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako4g03048 380 Gene3D - 245 378 IPR036873 -
Tako4g03048 380 CDD TST-Repeat-2 250 366 - -
Tako4g03048 380 FunFam Sulfurtransferase 73 215 - -
Tako4g03048 380 SMART rhod-4 249 370 IPR001763 -
Tako4g03048 380 SMART rhod-4 81 205 IPR001763 -
Tako4g03048 380 ProSitePatterns Rhodanese C-terminal signature. 354 364 IPR001307 GO:0004792(InterPro)
Tako4g03048 380 ProSiteProfiles Rhodanese domain profile. 259 373 IPR001763 -
Tako4g03048 380 ProSiteProfiles Rhodanese domain profile. 91 208 IPR001763 -
Tako4g03048 380 SUPERFAMILY Rhodanese-Cell cycle control phosphatase 78 210 IPR036873 -
Tako4g03048 380 SUPERFAMILY Rhodanese-Cell cycle control phosphatase 252 375 IPR036873 -
Tako4g03048 380 ProSitePatterns Rhodanese signature 1. 115 126 IPR001307 GO:0004792(InterPro)
Tako4g03048 380 Pfam Rhodanese-like domain 82 201 IPR001763 -
Tako4g03048 380 Pfam Rhodanese-like domain 250 366 IPR001763 -
Tako4g03048 380 FunFam Sulfurtransferase 244 375 - -
Tako4g03048 380 CDD TST-Repeat-1 80 203 - -
Tako4g03048 380 PANTHER THIOSULFATE SULFERTANSFERASE 73 377 IPR045078 GO:0004792(PANTHER)|GO:0005739(PANTHER)|GO:0016783(InterPro)
Tako4g03048 380 Gene3D - 72 215 IPR036873 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako4g03048 K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tako1g02760 . 94 299 Sulfurtransferasese/Rhodanese gene family AT5G19370 65.865 6.84e-104 303.0
Tako1g06630 . 31 198 Sulfurtransferasese/Rhodanese gene family AT3G08920 62.941 4.96e-77 229.0
Tako1g06631 . 31 198 Sulfurtransferasese/Rhodanese gene family AT3G08920 62.941 4.96e-77 229.0
Tako2g04798 . 23 152 Sulfurtransferasese/Rhodanese gene family AT2G17850 51.908 3.20e-43 138.0
Tako2g04799 . 28 146 Sulfurtransferasese/Rhodanese gene family AT2G17850 53.333 1.63e-41 134.0
Tako3g02499 . 10 383 Sulfurtransferasese/Rhodanese gene family AT5G23060 64.973 1.21e-173 488.0
Tako4g00606 . 82 242 Sulfurtransferasese/Rhodanese gene family AT4G01050 43.558 2.40e-29 115.0
Tako4g01078 . 1 229 Sulfurtransferasese/Rhodanese gene family AT2G42220 66.812 1.67e-111 318.0
Tako4g01079 . 1 213 Sulfurtransferasese/Rhodanese gene family AT2G42220 65.258 3.63e-99 285.0
Tako4g01080 . 40 229 Sulfurtransferasese/Rhodanese gene family AT2G42220 74.211 3.07e-107 308.0
Tako4g02037 . 43 438 Sulfurtransferasese/Rhodanese gene family AT1G17850 58.794 4.46e-168 476.0
Tako4g02038 . 43 438 Sulfurtransferasese/Rhodanese gene family AT1G17850 59.091 5.60e-170 481.0
Tako4g02586 . 132 461 Sulfurtransferasese/Rhodanese gene family AT2G40760 72.424 1.24e-176 495.0
Tako4g02587 . 82 464 Sulfurtransferasese/Rhodanese gene family AT2G40760 68.01 0.0 548.0
Tako4g03048 . 1 379 Sulfurtransferasese/Rhodanese gene family AT1G79230 71.354 0.0 574.0
Tako4g03063 . 1 378 Sulfurtransferasese/Rhodanese gene family AT1G79230 71.466 0.0 574.0
Tako4g03064 . 1 378 Sulfurtransferasese/Rhodanese gene family AT1G79230 71.466 0.0 574.0
Tako4g04930 . 17 581 Sulfurtransferasese/Rhodanese gene family AT1G09280 58.711 0.0 649.0
Tako5g03097 . 1 222 Sulfurtransferasese/Rhodanese gene family AT4G27700 65.801 6.81e-107 305.0
Tako6g01967 . 81 216 Sulfurtransferasese/Rhodanese gene family AT5G55130 32.847 2.01e-12 67.0
Tako6g01968 . 81 216 Sulfurtransferasese/Rhodanese gene family AT5G55130 32.847 2.20e-12 67.0
Tako6g04129 . 31 198 Sulfurtransferasese/Rhodanese gene family AT3G08920 62.941 4.71e-76 226.0
Tako6g04128 . 31 198 Sulfurtransferasese/Rhodanese gene family AT3G08920 62.941 4.71e-76 226.0
Tako6g04133 . 31 195 Sulfurtransferasese/Rhodanese gene family AT3G08920 63.473 1.18e-74 222.0
Tako6g04134 . 31 198 Sulfurtransferasese/Rhodanese gene family AT3G08920 62.941 5.25e-76 226.0
Tako6g04135 . 31 198 Sulfurtransferasese/Rhodanese gene family AT3G08920 62.941 5.25e-76 226.0
Tako6g04343 . 1 456 Sulfurtransferasese/Rhodanese gene family AT4G01050 50.214 1.42e-130 384.0
Tako7g02864 . 10 116 Sulfurtransferasese/Rhodanese gene family AT5G66040 54.63 2.77e-38 124.0
Tako7g04694 . 72 261 Sulfurtransferasese/Rhodanese gene family AT5G55130 23.963 2.66e-10 60.1
Tako7g04849 . 1 464 Sulfurtransferasese/Rhodanese gene family AT5G55130 69.231 0.0 659.0
Tako8g01480 . 343 564 Sulfurtransferasese/Rhodanese gene family AT1G09280 29.075 7.94e-16 75.9
Tako8g01917 . 96 179 Sulfurtransferasese/Rhodanese gene family AT5G19370 34.021 2.44e-08 49.7
Tako8g01918 . 96 179 Sulfurtransferasese/Rhodanese gene family AT5G19370 34.021 2.44e-08 49.7
Tako8g02472 . 53 292 Sulfurtransferasese/Rhodanese gene family AT4G24750 71.667 2.22e-133 378.0
Tako8g02473 . 53 290 Sulfurtransferasese/Rhodanese gene family AT4G24750 71.849 1.68e-132 376.0